| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3639 |
|---|
| Symbol | |
|---|
| ID | 4476238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4370153 |
|---|
| End bp | 4371127 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639728245 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_871265 |
|---|
| Protein GI | 117922073 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCTA ACAGAATCCT TGCCCTAACG GCGTTGGTCG CATTAGGCCT TATCTTAGCC
TATGGGCTCA AACTGGCTTA TAGCCCGCAG CCGAGCTTGT TGCAGGGGCA AATTGAAGCC
CGTGAATATA ACGTATCCTC CAAAGTACCT GGGCGGGTAG AGCAAGTGCT TGTGCGCCGT
GGCGATAGCG TCAGCGAAGG TGATTTATTA TTTGCCATTC ATAGTCCTGA ATTGGATGCC
AAGTTGATGC AGGCCGAAGG CGGCCGAGAT GCGGCTAAGG CGTTGCAACA GGAGGCGAAT
AACGGCGCCC GCACCCAAGA GGTGAGGGCG GCTAAGGAAC AATGGCTCAA GGCGCAAGCG
GCGGCAACGC TGGCGAAAAC CACTTATACC CGAGTGGAAA ATCTCTTCAA CGAAGGAGTC
GCGGCAAGAC AAAAACGCGA TGAAGCCTTT ACCCAGTGGC AAGCGGCCAA GTACACAGAA
CAAGCCGCAT TAGCCATGTA TCAAATGGCC GAAGAAGGCG CGCGGGTCGA AACCAAAGCC
GCTGCGGCGG GTAATGCTCG CATGGCCGAA GGGGCGGTGA AAGAAGTCAG CGCCATTATG
GCCGACAGCC AAATGCGCGC ACCTAAGTCT GGGGAAATCA GCGAAGTATT GTTGCAAGCG
GGGGAGCTAG CCCCGAGCGG CTTCCCAGTG GTAAGCCTTA TCGACATGCA GGATGCTTGG
GCAGTATTCC AAGTGCGTGA AGATCAGCTA AAACGCTTTA AAAAGGGCGA CAAACTGCCA
TTAACCATTC CCGCGCTAGA TAAAACCGTG GAGTTCACTG TCTCTCATAT CAGTGTGATG
GGCGACTTTG CGACTTGGCG TTCAACCGAA AGTGGCCATG ATTTTGATAT GCGCACCTTC
GAGGTGGAGC TGCGCCCAAC TGCGCCGATC CCCGATTTGC GTGTTGGTAT GTCTGTGCTG
CTCAGTGCCG AGTAA
|
|---|
| Protein sequence | MRANRILALT ALVALGLILA YGLKLAYSPQ PSLLQGQIEA REYNVSSKVP GRVEQVLVRR
GDSVSEGDLL FAIHSPELDA KLMQAEGGRD AAKALQQEAN NGARTQEVRA AKEQWLKAQA
AATLAKTTYT RVENLFNEGV AARQKRDEAF TQWQAAKYTE QAALAMYQMA EEGARVETKA
AAAGNARMAE GAVKEVSAIM ADSQMRAPKS GEISEVLLQA GELAPSGFPV VSLIDMQDAW
AVFQVREDQL KRFKKGDKLP LTIPALDKTV EFTVSHISVM GDFATWRSTE SGHDFDMRTF
EVELRPTAPI PDLRVGMSVL LSAE
|
|---|
| |