| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3470 |
|---|
| Symbol | |
|---|
| ID | 4476813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4161834 |
|---|
| End bp | 4162739 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639728079 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_871099 |
|---|
| Protein GI | 117921907 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC TAAGACATCT GCGAACCTTA ATGGCACTGA AGGAAAGTGG CAGCTTGGCG
GGCGCAGCCA AAAAACGTTT TGTCACTCAA TCGGCTCTCT CCCATCAAAT TAAGGAGTTA
GAGCAACGAA TTAACTCGCC CATTTTTGTG CGTAAAAGCA AACCCCTCTC CTTTACTCAA
GAAGGCGCAC GCCTGTTGCA CCTCGCCGAA GAGATCCTGC CGAAGGTGTT AGAAACGGAA
ACGGATCTGA AAAATGGCCT AGAGACAGAG ACCAATCAGC TCAGAGTGGG GATTGAATGC
CACAGCTGTT TTCGCTGGTT AATGCCAGTG ATGGAGCAAT TTAGGCAAGA TCATCCGCAG
GCCGAGTTAG ATCTGTCGAG CCGTCACCTG TTCGATTCGC TCAATGCCTT AGAAATGGGC
GAACTCGATA TAGTGCTGAC CTCAGATCCC GTGCCGGGGC ACTCGCTCGC CTATCAGCAT
TTGTTTGATT TTGAAGTGAA GTTAGTGGTT GCCAAGGATC ATCCCTTAGC GAAAGAAGCC
TATGTTACGC CTAAGCAATT GACGCGTTTA CCCATAATCA GCTACCCAGT GCCACTGGCG
CGTTTAGATA TTTACCGCCA CTTTTTAGAA CCCGCAGGTG TTGAGGCTGG CGAACAAAAG
ACCTGCGATT TGACCATGAT GTTATTGCAA CGCATCGCCT GTAAGGACGG CATCGCCGCC
CTGCCCAACT GGTCAATCAA TGAGGGACAT GGATTGAGCC TCGCCGCCGT TAAACTGGGT
CAAGAAGGCT TAAAACGCCC GCTATTTGGT GCCTACCGCC GCCACAGCGC GAACTCGGCC
TTAGTGCAAA ACTGGTTGCA ACTGGTGGCC AGCGAAGGCT TAGCGCGTCA GCAAAAATCC
AATTAG
|
|---|
| Protein sequence | MIELRHLRTL MALKESGSLA GAAKKRFVTQ SALSHQIKEL EQRINSPIFV RKSKPLSFTQ
EGARLLHLAE EILPKVLETE TDLKNGLETE TNQLRVGIEC HSCFRWLMPV MEQFRQDHPQ
AELDLSSRHL FDSLNALEMG ELDIVLTSDP VPGHSLAYQH LFDFEVKLVV AKDHPLAKEA
YVTPKQLTRL PIISYPVPLA RLDIYRHFLE PAGVEAGEQK TCDLTMMLLQ RIACKDGIAA
LPNWSINEGH GLSLAAVKLG QEGLKRPLFG AYRRHSANSA LVQNWLQLVA SEGLARQQKS
N
|
|---|
| |