Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3309 |
Symbol | rumB |
ID | 4477610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3971082 |
End bp | 3972236 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639727919 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | YP_870939 |
Protein GI | 117921747 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGTACAT TAGTACAATG TGGGTATTTT GAACGAGGCC AATGCCAATC CTGTCGCCAT ATTAAGCTCC CTATGGCGCA GCAACTGGCG GCCAAAAACC TAGAATTGCA GCAATTGTTA GCGCCTTTTG TCGATAAGAC CGAACCGCAA TTTTTACCAC CGGTTGTGGG TGACAGCAGC GGTTTTCGTA ACAAGGCGAA AATGGTCGCC TTGGGCGCAG CCCATGCGCC TGTGTTGGGG ATTGTTAGTC CCAGCGGCGA AGCGGTGAGC CTGTGTGACT GCCTGTTGTA TCCTACTGAT ATGCAAGCCT TACTCCACCG TTTAGAGCGC TTTGTACAGC AAGCGGGCAT TCCGCCTTAC CGTGTCGATA AGGCCAAGGG CGAGCTTAAA TTTATCCTAC TGACGCGCAG CCAAGTGCGT GGCGAGTATA TGTTGCGGTT TGTGCTGCGC TCGCGGGATG CCATCGCCCG TATCGAGCGT GAATTGCCTA CGCTGATGGC CGAATATCCG CAGATCAAAG TCGTATCCGT CAATTTGCAA CCTGTTCATA TGGCTATCTT GGAGGGTGAG GAGGAGATTT TCCTCACTGA AAATACTCGC CTCGAAGAGC GCTTTAACGA TGTGCCTTTG TTTATTCGTC CCAAGAGCTT TTTTCAAACC AATCCGCAGG TGGCGGCAAA GCTGTACCAA ACCGCCCGTG AGTGGGTGGC CGACTTCGCG CCAGCTTCCC TTTGGGACTT ATTCTGTGGT GTGGGCGGCT TTGGTTTGCA CTGTGCAGCT AAAGATATCC CACTGACAGG GATTGAAATT GAAGCCGAAG CCATTGCCTG CGCTAAGATG TCGGCGCAGT TGATGGGATT GGATAAAGTA GAATTTATGG CGCTCGATTC CACCGACTTT GCCAAGGGCG AGGCGGCGCA AACTAAGCCT GAGTTGATTA TTGTCAATCC ACCGCGCCGC GGGATTGGTG AGTCCCTGTG CCATTCCTTA AGTGAGTTTG CGCCTAAGGC GATTTTGTAT TCCAGCTGCA ATCCTAAAAC CTTAGCCAAA GATCTCGGCC ATATCCGTGG CTATCGGTTA ACTAAGGTGC AGTTATTCGA TCTTTTTCCT CACTCTGATC ATTTCGAAGT GTTAGCCTTA TTAGTCAAAG ACTAA
|
Protein sequence | MSTLVQCGYF ERGQCQSCRH IKLPMAQQLA AKNLELQQLL APFVDKTEPQ FLPPVVGDSS GFRNKAKMVA LGAAHAPVLG IVSPSGEAVS LCDCLLYPTD MQALLHRLER FVQQAGIPPY RVDKAKGELK FILLTRSQVR GEYMLRFVLR SRDAIARIER ELPTLMAEYP QIKVVSVNLQ PVHMAILEGE EEIFLTENTR LEERFNDVPL FIRPKSFFQT NPQVAAKLYQ TAREWVADFA PASLWDLFCG VGGFGLHCAA KDIPLTGIEI EAEAIACAKM SAQLMGLDKV EFMALDSTDF AKGEAAQTKP ELIIVNPPRR GIGESLCHSL SEFAPKAILY SSCNPKTLAK DLGHIRGYRL TKVQLFDLFP HSDHFEVLAL LVKD
|
| |