| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3256 |
|---|
| Symbol | |
|---|
| ID | 4477365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3896703 |
|---|
| End bp | 3898358 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639727866 |
|---|
| Product | ATPase domain-containing protein |
|---|
| Protein accession | YP_870886 |
|---|
| Protein GI | 117921694 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAACTGC GAACAAAATT AATCATTTAT TCAACCGTTT GTTGCGCCTT AGGTGTGCTC
TTGACCTTAG GTGTTGTGAG CTATCGTCCG ACTATCTCGC CCGTTGAAGT CGCTGCGCCC
ATCAAGATCC CCGATATAAC TATACCGCCC CTCGATGTAG ATAAGCTGCA AGAGACTGTC
GAGGCAGCGA TTAAAAATAA CGAGCAATTA CAGCAAACTC TGCCATTGCA GGAGCGTTTA
AGGGCGGAAC AGATTAAGCA TGAGCTGCAA AAGTTGGAGC AACTTAAGCA AGAACAGCTG
CAAATTAAGC TCTATAAACT CGAGCAACTT AAAGACGGAC TCTTTAGCCC TTCAGTCCAT
CCTGAAGTGC CCCCCATAGC GCCACCCGCT GAACCTATCT CGCTGCCTAA GTTGAAGTTA
GAACACGAGG CCGAGTCCAC ACCGCCAATC ACTGAATGGC TATTCATATT ACTGTTTTCC
TGCGGCATCT GTGCCTTGGG TGTGGCTTGG TTTACCCGCC ATTTAGCTCG CAGTCTCAAT
GCCTTAGAGG TTGGTTTACT CAACTTTAAC GACAATGACT TTAGCGTCAG CATTCCGGCT
AATGGTGAGG GGCAGCTGAA AGCATTGGCG GAGTTATTCA ATGATTCGGC GGCTAAGTTG
CGCCAAGAGC GGCAATATAT TTACCAGCGC GAATTGCTGC TGGATAAGGT AATTCAAAGC
TCTCCGAATG TGATGCTGCT GTTTAACGAT CACCAAAAAC TCATGTATGC CAACGATGCG
GCGCGGCATC TTTTTCATAT CAAAGGCAAA ATGGAAGGCT TGAGCCTCGA CGAGCTGCTG
CAAGACTTAC CCGAAGCGCT TGCCTTGGCC CTTAAGCAGG AAAAGAGCGG CCTGTTTACC
ATGGGCGAGG ATGATACTGA GACTTGGTAT CTGAGCCGTG GCCAGTTTTT ACTGAATAAC
CAACAGCATA ACTTAATCTT GCTCAAGCAG ATGACCCGAG AGCTTAATCG TCAGGAAGTG
GCGGTATGGA AGAAGGTGAT CCGCATTATC AGCCATGAGC TAAATAATTC CGTCGCGCCC
ATCGCCTCCA TGGTGAACTC GGGGCGTTTA CTGACGAAAG ATCTCGATAA TCCCAAGCTT
AAGCTGATAT TCGACACCAT AGAGAGTCGC ACGAATCACT TGAGCCAGTT TATTTTCAAT
TATGCGCGCT TTGCTAAACT GCCTTTACCG CAGCGACGTG ATGTGCCGTG GCAGCAGCTT
ATCGAGCATT TAACCCAACA TTACCCTTTT ACCTTAGCCA ATGAGTTACC CGCTGAAATG
GGCTATTTCG ACCAAGGGCA AATGGAGCAA GTCCTGCTGA ATTTACTGAA AAATGCCCAT
GAATCAGGTT CTAATCCCGA TGAAGTCACG CTCTCGATTC GCCACCAAAC CATGGTCGAT
GGGACGGGCT TTAGTATCAA AATCGAAGAT TGTGGCAGTG GTATGTCCGA GGAAGTGTTA
GAGCAAGCCC TATTGCCCTT TTACTCGACT AAACAATCGG GCACGGGTTT AGGCCTGCCC
CTTTGCCGCG AAATTATCGA AGCCCACGAT GGTAGCATAA GCATGCATAA TCGCAGCGAC
GGCGGCCTAT CGGTACATTT GTGGCTGCCG CAATAA
|
|---|
| Protein sequence | MQLRTKLIIY STVCCALGVL LTLGVVSYRP TISPVEVAAP IKIPDITIPP LDVDKLQETV
EAAIKNNEQL QQTLPLQERL RAEQIKHELQ KLEQLKQEQL QIKLYKLEQL KDGLFSPSVH
PEVPPIAPPA EPISLPKLKL EHEAESTPPI TEWLFILLFS CGICALGVAW FTRHLARSLN
ALEVGLLNFN DNDFSVSIPA NGEGQLKALA ELFNDSAAKL RQERQYIYQR ELLLDKVIQS
SPNVMLLFND HQKLMYANDA ARHLFHIKGK MEGLSLDELL QDLPEALALA LKQEKSGLFT
MGEDDTETWY LSRGQFLLNN QQHNLILLKQ MTRELNRQEV AVWKKVIRII SHELNNSVAP
IASMVNSGRL LTKDLDNPKL KLIFDTIESR TNHLSQFIFN YARFAKLPLP QRRDVPWQQL
IEHLTQHYPF TLANELPAEM GYFDQGQMEQ VLLNLLKNAH ESGSNPDEVT LSIRHQTMVD
GTGFSIKIED CGSGMSEEVL EQALLPFYST KQSGTGLGLP LCREIIEAHD GSISMHNRSD
GGLSVHLWLP Q
|
|---|
| |