| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3236 |
|---|
| Symbol | |
|---|
| ID | 4477345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3881646 |
|---|
| End bp | 3882521 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639727846 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_870866 |
|---|
| Protein GI | 117921674 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00481831 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACCGA AACGATATCT GGTTTTTGGC GCATTAACCG TTGCAATCCA AACGGGTGTG
ATTGCATCGC AGCCTGCTAT GCCATTACTA AGTAGTCTCA GTGAATCGAC ACAAATGACC
GCATTCAAAG AAGCAAATAA AGCGGTTACC TTAAGCTTTG CAACCCATAG TGCAGCAGAA
AAATCAGCGG CCATATCAGC GATAAAAAAT ACGCCTGCAA ATACGATTAC CGAAGATGCG
ATTTCAACAA ATGTGCCTAA TACCAGTAAG CCCCAAACGG CGCCAACACT CACTGATACA
CCAGTAACTG AAATAGCAAG GCAAGCACCC AAACCAACCA AAGCTAAGCC GCAAACGATT
CAATCCGCAG TGCAAAACAA GCCAACGCCG AACACATCCT CTAAGGCAGG TGCGACAACT
GCCAAACCTC TTATGGCCGC AAATACACAA CATCAGAAAG AAACTGGAGA GATAACAAAA
CCTTCTGACC AACTGTTGTC GCAAATGGCA GAAAGCAACA CTCAAGATAA AACCGTTATT
AACAATACCA ATGTGACGCC CACCAGTGTC AGCGAGAACA CTAAAGCCAC TCCCGAGGTT
ATCGAGCTGG CAACACCGAC TTTTGCCAGT AAACCGCCGC AACCCACCTA CCCACGCATG
GCACGTAAAA AAGGGCTTGA AGGCACGGCG ACGGTAGAAG TGATGTTTAA CGAATTTGGA
CAACAGCTCG CCCTCACCTT AGTGAAAAGC TCGGGCGTGG GGCTGCTAGA TCAAGCGGCA
TTAGAGGCGG TTGAAACCTG GGAGTTTCAA GCGCCCACCA ACAAACTGGC CAGCCATTAC
AAGGTGAGAG TACCTATTCG CTTCGCCTTA AATTGA
|
|---|
| Protein sequence | MTPKRYLVFG ALTVAIQTGV IASQPAMPLL SSLSESTQMT AFKEANKAVT LSFATHSAAE
KSAAISAIKN TPANTITEDA ISTNVPNTSK PQTAPTLTDT PVTEIARQAP KPTKAKPQTI
QSAVQNKPTP NTSSKAGATT AKPLMAANTQ HQKETGEITK PSDQLLSQMA ESNTQDKTVI
NNTNVTPTSV SENTKATPEV IELATPTFAS KPPQPTYPRM ARKKGLEGTA TVEVMFNEFG
QQLALTLVKS SGVGLLDQAA LEAVETWEFQ APTNKLASHY KVRVPIRFAL N
|
|---|
| |