Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_3133 |
Symbol | ispH |
ID | 4477727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3758789 |
End bp | 3759745 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639727737 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_870763 |
Protein GI | 117921571 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTAG ATCCTACCAG CCCAAGTTTA AATATTATGC TGGCCAATCC TCGCGGCTTT TGTGCTGGTG TGGATCGCGC CATTAGTATT GTTGAGCGCG CACTTGAGTT ATTTTCGCCG CCGATTTATG TTCGCCATGA AGTGGTGCAT AACCGCTATG TAGTGCAAAA TCTGAAGGAC CGCGGTGCCG TTTTTGTCGA AGAGTTAGAC CAAGTACCGG ATAACAATAT TGTTATCTTC AGTGCTCATG GAGTTTCTCA GGCTGTGCGT GCCGAGGCTA AGGCGCGTGG GTTGCGTGTT TTCGATGCGA CTTGTCCATT AGTCACCAAA GTGCATTTGC AGGTTACTCG AGCGAGCCGC AAGGGGATTG AATGTATTTT GATTGGCCAT GAGGGACATC CAGAGGTGGA AGGCACCATG GGGCAATACG ATAACCCTAA TGGTGGTGTT TATCTGATTG AATCTCCTGC GGATGTCGAA ACTTTAGAAG TTCGTGATCC AAATAACCTC TGCTTCGTGA CTCAAACAAC GCTCTCGGTA GATGATACCC TCGATATTAT CACCGCATTG CAAAAGCGTT TTCCTTCGAT TGAAGGTCCG CGTAAGGATG ATATTTGTTA CGCGACGCAA AACCGTCAGG ATGCAGTGCG GAACTTATCG GCCGATGTGG ATCTGTTAAT TGTGGTCGGC TCGAAAAACA GCTCTAACTC TAACCGCTTG CGTGAATTGG CATTAAAGAC GGGGACTCAA TCTTATCTGG TTGATACCGC GGATGATATC GATTCATCTT GGTTTGAAAA TGTGACTAAA GTTGCGGTGA CCGCAGGCGC ATCGGCACCA GAAGTGCTGG TTCAGCAAGT GGTTCAAGCG ATTGCGAAAT TAGCACCGAG TGTCGTTACC GAAGTTGAAG GACGTAAAGA AGATACCGTC TTTGCTGTAC CAGCGGAATT ACGCTAG
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Protein sequence | MKLDPTSPSL NIMLANPRGF CAGVDRAISI VERALELFSP PIYVRHEVVH NRYVVQNLKD RGAVFVEELD QVPDNNIVIF SAHGVSQAVR AEAKARGLRV FDATCPLVTK VHLQVTRASR KGIECILIGH EGHPEVEGTM GQYDNPNGGV YLIESPADVE TLEVRDPNNL CFVTQTTLSV DDTLDIITAL QKRFPSIEGP RKDDICYATQ NRQDAVRNLS ADVDLLIVVG SKNSSNSNRL RELALKTGTQ SYLVDTADDI DSSWFENVTK VAVTAGASAP EVLVQQVVQA IAKLAPSVVT EVEGRKEDTV FAVPAELR
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