| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3089 |
|---|
| Symbol | |
|---|
| ID | 4477805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3704553 |
|---|
| End bp | 3706103 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727693 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_870719 |
|---|
| Protein GI | 117921527 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000368989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0911268 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTTG GTACCAATCA GGTAAGCAAG ACACATTCGT TTATGACAGT GTCGCTTATC
GAATTGTGGG AACGTTTTGG TTATTACGGC ATGCAGGCGC TGATCGTGTA CTTTATGGTG
CAGCGTCTTG GCTTTGATGA CTCCCGTGCA AACTTAGTTT GGAGTGCCTG TGCGGCACTG
ATTTACGTGT CGCCGGCCAT CGGCGGTTGG GTTGGGGATA AAATTCTCGG CACCAAACGC
ACTATGCTGC TCGGTGCGGG GATTTTGTCG GTAGGTTATG CATTGATGAC AGTGCCGACC
GAAAACACTT GGTTTATGTT CTCCGCCCTT GGGGTGATTG TGGTCGGTAA CGGCCTATTT
AAACCCAATG CCGGTAACTT AGTCCGTAAG ATTTACGAGG GTGACGATTC TAAAATCGAC
AGCGCCTTTA CCATCTACTA CATGGCGGTA AACGTAGGTT CGACCTTCTC TATGCTGTTA
ACGCCTTGGA TTAAGGACTA TGTTAACGCG CAATACGGTA ACGAATTTGG CTGGCATGCC
GCCTTTGCGG TGTGCTGTGT GGGCTTAATC GTCGGCTTAG GTAACTATGC CCTGATGCAC
AAGAGCCTCG CCAACTATGG TTCAGAGCCT GATACTCGCC CTGTCAACAA GAAGAACTTG
GCTATCGTCT TAGTCTTAGC GGCGCTTTCC GTTGTGGCTT CAGCCATTAT TCTTGAATAT
GAAGATGTTG CTCGAGTATT CGTGTATGCC GCGGGTGTGG CGGTATTAGG AATTTTCTTC
CACTTAATTC GTACCAGTGA GCCAAGTGAG CGGGCCGGCC TTATCGCAGC GCTAATCCTT
ACGGTGCAGA CCGTCTTCTT CTTTATCTTC TATCAACAAA TGTCGACCTC ACTGGCTCTG
TTTGCACTGC GTAACGTCGA TTGGGATTTC CAAGTCTTTG GCACCCATTT GTGGACTTGG
TCTCCTGCGC AGTTCCAAGC ACTGAACCCA ATCTGGATCA TGGTGTTAAG CCCAGTTCTG
GCTTGGAGTT ATTCATGGGC AGGTCGCAAC AATAAGGACT TTTCGATTGC CGCTAAGTTC
GCCTTAGGTT TTGCGGTTGT CGCGATAGGC TTCTTTATCT ACGGTTTTGC AGGCCAATTT
GCCGTTGAGG GTAAGACCTC TTCTTGGGTG ATGATTTGGG GTTATGCTTC TTACTCACTC
GGCGAACTGC TGGTGAGTGG TCTTGGTTTA GCCATGATCG CCCGCTATGT CCCCGCTCGC
ATGGGCGGCT TTATGATGGG CGCGTATTTC GTGGCATCGG GTATTTCACA GTACTTAGGC
GGCGTTGTGG CTAACTTTGC CAGCGTGCCA CAGGACTTAG TCGACCCGCT GCAAACTCTG
CCAGTTTATA CCAATCTATT CAATAAATTA GGTATTGCGG CCGTGGTCTG TACTTTCATC
GCCTTAGCCG TATTACCTCT GATGCGCCGT TTGACCGAAA GTCATCACGC CCATAACAGT
ATTGAAGATA ACGCTGCGGC CTCACTACGT GATGTGAAAG CCGAGCAATA A
|
|---|
| Protein sequence | MTLGTNQVSK THSFMTVSLI ELWERFGYYG MQALIVYFMV QRLGFDDSRA NLVWSACAAL
IYVSPAIGGW VGDKILGTKR TMLLGAGILS VGYALMTVPT ENTWFMFSAL GVIVVGNGLF
KPNAGNLVRK IYEGDDSKID SAFTIYYMAV NVGSTFSMLL TPWIKDYVNA QYGNEFGWHA
AFAVCCVGLI VGLGNYALMH KSLANYGSEP DTRPVNKKNL AIVLVLAALS VVASAIILEY
EDVARVFVYA AGVAVLGIFF HLIRTSEPSE RAGLIAALIL TVQTVFFFIF YQQMSTSLAL
FALRNVDWDF QVFGTHLWTW SPAQFQALNP IWIMVLSPVL AWSYSWAGRN NKDFSIAAKF
ALGFAVVAIG FFIYGFAGQF AVEGKTSSWV MIWGYASYSL GELLVSGLGL AMIARYVPAR
MGGFMMGAYF VASGISQYLG GVVANFASVP QDLVDPLQTL PVYTNLFNKL GIAAVVCTFI
ALAVLPLMRR LTESHHAHNS IEDNAAASLR DVKAEQ
|
|---|
| |