| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2890 |
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| Symbol | |
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| ID | 4478765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 3460159 |
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| End bp | 3461169 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639727496 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_870523 |
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| Protein GI | 117921331 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000476084 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000772445 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT
TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCC
GGCTTAACTG CTCTCGAGAA GCAGGGCGAA CTACTTCCGC AGCGTACTTT AGAACTGATC
GAAAAAAACC GCATCACCCT GAAAGGCCCG CTGACTACAC CAGTAGGCGA AGGTTTCACC
TCTATCAACG TGACATTACG TAAGAAATTC GGCCTGTACG CTAACGTGCG TCCAGTGTTG
TCTTTCAAAG GCACTCAAGC CCGTTATGAA AACATTGATA TCATTACTGT GCGTGAAAAC
ACCGAAGGCA TGTACTCAGG CCACGGTCAA AAAGTGTCTG AAGACGGCAC CACAGCTGAA
GCGACCAGTA TCGTCACTCG CCAAGGCGCT GAGCAGATCG CGACATTCGC CTATGAACTG
GCCCGCAAAG AAAACCGTAA GAAAGTCACT ATCGTGCACA AAGCAAACAT CATGAAGTCA
ACTTCAGGTC TGTTCCTGAA AGTGGCCCGA GAAGTGAGTC AACGCTACCC AGACATCAAA
ACTGAAGAAA TGATCGTCGA TGCGACTTGC ATGAAGTTAG TGATGAACCC AGAAAACTTC
GACGTCATCG TGACCACCAA CCTGTTCGGT GACATTCTGT CGGATCTGTG TGCTGGTTTA
GTCGGTGGTT TAGGTATGGC TCCTGGCGCC AACATTGGCC GTGATGCAGC GATTTTCGAA
GCGGTTCACG GCAGCGCGCC AGATATCGCA GGTAAAAACC TCGCGAACCC AACATCTGTG
ATCTTAGCCT CTATCCAAAT GCTGGAATAC TTAGGCATGG CCGATAAAGC CGATCTGATC
CGTAAAGCCG TATCGGCAGT GATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC
ACCCACGGTA CGACTGACTT CACTCAAGCG GTGCTTGACC GTCTGTCATA A
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| Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPQRTLELI
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN
TEGMYSGHGQ KVSEDGTTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKADLI
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLS
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