Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2880 |
Symbol | |
ID | 4478755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3444500 |
End bp | 3445444 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639727486 |
Product | porin |
Protein accession | YP_870513 |
Protein GI | 117921321 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000245677 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000646129 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGAACG TTTTTTGTAA AACTCTACTT GCTTCTGCGC TAGCTTCTGC AACTCTGGCT TCTGCTTATG CCGCTGAGCC ACTGACTGTT TATGGTAAGT TGAATGTTAC CGCTCAATCA AATGATGAGA AAGGTGATTC TACAACAACT ATTCAAAGTA ATGCTTCTCG TTTTGGTGTG AAGGGTGATT TCGAACTGTC TAGCTCGCTG GAAGCGTTCT ACACAGTAGA GTACGAAGTT GATACTGGCG CTGCAACAAG CGACAACTTC AAAGCCCGTA ACCAATTCGT TGGTTTAAAA GGTGCATTTG GTTCTTTCTC TGTTGGTCGT AACGACACTC TGTTAAAGAT CTCTCAAGGT AACGTTGACC AGTTCAACGA TTTATCTGGT GACTTAAAGA GCCTGTTCAA AGGTGAAAAC CGTTTAGGCC AAACGGCAAC TTACCTGTCA CCTTCAATCG GTGGTTTCGT ATTCGGTGCA ACTTATGCTG CTGAAGGCGA TGCTGACCAA CAAGCTCAAG ACGGTTTCAG CTTAGCCGCT ATGTACGGTG ACGCTAAACT GAAAAAATCA CCTTTCTACG CCGCTATCGC TTACGATTCT GACGTAAAAG GTTACGAAAT CCTGCGTGCA TCGGTACAAG GTAAAATCGC TGATTTAACC TTAGGTGGTA TGTACCAACA ACAGGAACAA ACCTACAAAA ACTCTTTACC TGTTAACACT GACAGCGTGA ACGGTTACCT GTTAAGCGCC GCTTACGATA TCAACGCAGT GACCTTAAAA GCTCAATACC AAGACATGGA AGACTTAGGC GATTCATGGT CAGTGGGTGC GGACTACAGC TTAGGTAAGC CAACGAAAGT GTTTGCTTTC TATACTAACC GCTCTATGGA AGCGTCTAAC GACGATGACA AATACATCGG TGTTGGTTTA GAACACAAGT TCTAA
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Protein sequence | MMNVFCKTLL ASALASATLA SAYAAEPLTV YGKLNVTAQS NDEKGDSTTT IQSNASRFGV KGDFELSSSL EAFYTVEYEV DTGAATSDNF KARNQFVGLK GAFGSFSVGR NDTLLKISQG NVDQFNDLSG DLKSLFKGEN RLGQTATYLS PSIGGFVFGA TYAAEGDADQ QAQDGFSLAA MYGDAKLKKS PFYAAIAYDS DVKGYEILRA SVQGKIADLT LGGMYQQQEQ TYKNSLPVNT DSVNGYLLSA AYDINAVTLK AQYQDMEDLG DSWSVGADYS LGKPTKVFAF YTNRSMEASN DDDKYIGVGL EHKF
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