| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2843 |
|---|
| Symbol | |
|---|
| ID | 4478718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3402696 |
|---|
| End bp | 3404342 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639727449 |
|---|
| Product | 2-nitropropane dioxygenase, NPD |
|---|
| Protein accession | YP_870476 |
|---|
| Protein GI | 117921284 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | [TIGR02814] PfaD family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATA CCACACTCGA TAATAAAAAG CTCAGTCCTT GGCCATGGCA GGTTGATGAA
GCCGCCATCA GTTTCGATAT CGATTCCCTT GGCAAAAAAC TTAAAGATCT CAATCAAGCC
TGTTACTTAG TCAATCATGC CGAAAAAGGT TTAGGCATAG CCCAAAGCGC CGAGGTGGTG
GGTCTTGCAG AACCCAGCAA TAGCTTACAC AAAAGCAATG GTTTGCATCC TGTGAGTGCC
TTCGCCCCCG CCCTTGGCAC CCAAAGCTTG GGTGACAGTA ATTTTCGCCG CGTGCATGGG
GTGAAATACG CCTACTACGC CGGCGCCATG GCCAACGGCA TCGCCTCGGA AGAGTTAGTT
ATCGCCTTAG GTCAGGCGGG CATTCTGTGC TCCTTTGGCG CGGCAGGGTT AATTCCATCG
CGCGTTGAAG CCGCGATTAA ACGCATTCAA ACGGCATTGC CCAATGGCCC CTACGCCTTT
AACCTGATCC ACAGCCCGAG CGAGCCAGCG CTTGAGCGTG GCAGTGTCGA ACTCTTCCTT
AAGCATCAAG TGCGTACAGT TGAGGCTTCG GCCTTCTTGG GCTTAACGCC GCAAATCGTC
TATTACCGCG CCGCAGGTCT GAGCCGCGAT GCCAACGGCG AGATTGTGAT TGGCAACAAA
GTGATTGCTA AAATCAGCCG TACCGAGGTG GCCACCAAGT TTATGGAGCC CGCCCCGGTT
AAGATGCTGC AACAATTAGT GAACGAAGGG CTTATCAGCG AAGAGCAAAT GTTGATGGCG
CAATCTGTGC CCATGGCCGA TGACATTACC GCCGAAGCCG ACTCTGGCGG CCACACCGAC
AATCGCCCTC TGGTCACGCT ATTGCCGACC ATTTTGGCGC TCAAAGATAC CATTCAAGCC
AAGTACCAGT ACAAAACGCC GATCCGTGTG GGCGCAGGTG GTGGGATCGG CACGCCCGAT
GCGGCGCTGG CAACTTTCAA TATGGGCGCG GCCTTTATTG TCACCGGCTC AATCAATCAA
GCCTGTGTTG AGGCGGGAGC CAGCGAACAT ACCCGCAAGT TACTCGCCAC CACCGAAATG
GCCGATGTGA CTATGGCGCC CGCCGCCGAT ATGTTCGAAA TGGGCGTTAA GTTACAAGTG
GTTAAGCGCG GCACCCTATT CCCGATGCGT GCCAATAAAC TCTATGAGAT TTACACCCGC
TACGACTCGA TTGAGGCGAT TCCGGCAGAG GAAAGACAAA AGCTAGAAGA GCAAGTGTTT
CGCGCCTCAC TAGATGTGAT TTGGGCAGGT ACTGTGGCGC ACTTTAATGA GCGCGATCCT
AAGCAAATTG AACGCGCGCT GGATAACCCA AAACGCAAAA TGGCACTGAT TTTCCGTTGG
TATTTGGGTC TTTCGAGCCG CTGGTCGAAT ACAGGCGAAG TTGGCCGCGA AATGGATTAC
CAGATTTGGG CAGGCCCCGC CCTCGGCGCC TTTAATGCCT GGGCCAAAGG CAGTTATTTA
GATGATTACC GCGAGCGCAA TGCGGTCGAT TTGGCGAAAC ATTTAATGCA AGGCGCTGCC
TATCAAGCAC GGATTAACCT GTTGTTATCC CAAGGGGTAA GTATTCCGGT CAGCTTGCAA
CGCTGGAAAC CACTGCAACG CTGCTAA
|
|---|
| Protein sequence | MTNTTLDNKK LSPWPWQVDE AAISFDIDSL GKKLKDLNQA CYLVNHAEKG LGIAQSAEVV
GLAEPSNSLH KSNGLHPVSA FAPALGTQSL GDSNFRRVHG VKYAYYAGAM ANGIASEELV
IALGQAGILC SFGAAGLIPS RVEAAIKRIQ TALPNGPYAF NLIHSPSEPA LERGSVELFL
KHQVRTVEAS AFLGLTPQIV YYRAAGLSRD ANGEIVIGNK VIAKISRTEV ATKFMEPAPV
KMLQQLVNEG LISEEQMLMA QSVPMADDIT AEADSGGHTD NRPLVTLLPT ILALKDTIQA
KYQYKTPIRV GAGGGIGTPD AALATFNMGA AFIVTGSINQ ACVEAGASEH TRKLLATTEM
ADVTMAPAAD MFEMGVKLQV VKRGTLFPMR ANKLYEIYTR YDSIEAIPAE ERQKLEEQVF
RASLDVIWAG TVAHFNERDP KQIERALDNP KRKMALIFRW YLGLSSRWSN TGEVGREMDY
QIWAGPALGA FNAWAKGSYL DDYRERNAVD LAKHLMQGAA YQARINLLLS QGVSIPVSLQ
RWKPLQRC
|
|---|
| |