Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2818 |
Symbol | dapD |
ID | 4479806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 3366292 |
End bp | 3367116 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639727424 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_870451 |
Protein GI | 117921259 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCTT TACGCCAACG TATTGAGGCC GCATTTGAAG CGCGTGCCGA CATCACACCA AGCACTGTTG ACGCAAGCGT GCGTAACGAT GTGCAAAATG TCATCAATAT GCTCGATAAA GGTGAACTAC GCGTCGCCGA GAAAATCGAT GGCCAATGGC ATGTACATCA ATGGTTGAAG AAGGCGGTAT TACTGTCATT CCGTATTTTC GATAACGCCG TTATCGATGG TGCCGAAACC AAATATTTCG ATAAAGTACC GTTAAAGTTC GCCGAATATG ACGAAGCCCG CTTTAAAGCC GAAGCCATCC GTGTGGTGCC ATCGGCAACC GTACGTAAAG GTTCATTCAT CGGTAAAAAC ACCGTATTAA TGCCATCTTA TGTAAACCTT GGTGCTTACG TTGACGAAGG CACTATGGTT GACACTTGGG CAACCGTTGG CTCATGTGCG CAAATCGGTA AGAACGTGCA CTTATCTGGC GGTGTGGGTA TCGGTGGCGT ACTCGAACCG CTGCAAGCGG GCCCTACCAT TATCGAAGAC AACTGCTTTA TCGGCGCACG CTCAGAAATC GTTGAAGGCG TCGTGGTTGA AGAAGGCTCG GTGATTTCCA TGGGCGTTTA TATCGGCCAA AGTACCCGTA TCTATGACCG TGAAACTGGC GAAATTCACT ACGGTCGTGT ACCAGCTGGC TCAGTCGTAG TATCGGGTAA CCTGCCATCG GCTTGCGGTA AATACAGCCT ATACGCTGCG ATTATCGTCA AGAAAGTAGA TGCGAAAACC CGTGGTAAAG TGGGTATCAA CGAACTGTTA CGTATCGTCG ATTAA
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Protein sequence | MEALRQRIEA AFEARADITP STVDASVRND VQNVINMLDK GELRVAEKID GQWHVHQWLK KAVLLSFRIF DNAVIDGAET KYFDKVPLKF AEYDEARFKA EAIRVVPSAT VRKGSFIGKN TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGNLPS ACGKYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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