| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2809 |
|---|
| Symbol | |
|---|
| ID | 4479796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3356445 |
|---|
| End bp | 3357635 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727415 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_870442 |
|---|
| Protein GI | 117921250 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000627972 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATA TGGTGATTTT GGGCGCAACC GGGTCGATTG GTGCCAGCAC TTTAAGTGTA
ATTTCGGCTA ATCCCGATGC TTATCGTGTT TACGCTTTAG TGGCGAATGC GAGTGTCGAT
AAGATGCTCG CCCTGTGTGT GACCCATCGC CCCCAAGTCG CCCATATGGT CGATAGTCAG
GCCGCATTAG CGCTACAAGC TAAGCTTCCC CCTGAGCTTA ATATCCAAGT CACAAGTGGC
GAGGATGAAC TCATCGCCTT AGTCACAGCC ACCGAAGTGG ATACTGTGAT GGCCGCTATC
GTCGGCGCAG CGGGGTTAGT GCCCACCTTA GCCGCTGTCA AAGCGGGTAA GCGAGTATTA
CTTGCCAATA AAGAGGCCTT GGTGATGTCA GGTGAACTCT TTATTGAGGC CACGAAAGCA
TCGGGCGCTA CTTTGTTGCC GGTCGATAGT GAGCACAATG CAATTTTCCA ATGCTTACCC
GAAGAGGTGC AGGCTAATTT AGGCCGCTGT GATTTAGCCG CATCGGGCAT TTCACATATT
TTACTGACAG GCTCTGGCGG CCCCTTTTTA ACCGCTGAGC TTGCCAGCCT TGCGTCTATG
ACGCCAGCGC AGGCCTGTAA ACATCCAAAC TGGTCGATGG GCCCGAAAAT TTCAGTCGAC
TCCGCCACTA TGATGAATAA AGGCTTGGAG TTTATTGAAG CTCGTTGGTT GTTTAATACT
CAGAAAGACC AATTAAAGGT GGTTATCCAT CCGCAGAGTG TTATCCATTC GATGGTGCAA
TACCGGGATG GTAGCGTGAT CGCGCAAATG GGTAACCCGG ATATGCGTAC ACCGATTGCA
CATTGTATGT CCTATCCACA AAGAATTCGC TCTGGCGTTG AACCTTTGGA TTTTTTCAAA
GTCGGACAGT TAAGCTTTTG TGAGCCAGAC TTTAATCGCT TCCCCTGTTT GGCGTTAGCG
ATCGCCGCTT GTGCCCAAGG TCAAGAAGCG ACTACGGTAC TCAATGCCGC CAATGAAATC
GCCGTTGAGG CATTTTTACA GGGGCAGATT GGTTTTACCC ATATCGCCAA GGTGAATGAA
GCCTGTTTAT CCTCTGTGCC TAAACGGGCG ATGACCAGCA TCGATGATAT TATCGCCCTG
GATGCACAAA CGCGGATTTA TGCCCGCGAA CAGTTAGCGA AATTTGCTTA A
|
|---|
| Protein sequence | MQNMVILGAT GSIGASTLSV ISANPDAYRV YALVANASVD KMLALCVTHR PQVAHMVDSQ
AALALQAKLP PELNIQVTSG EDELIALVTA TEVDTVMAAI VGAAGLVPTL AAVKAGKRVL
LANKEALVMS GELFIEATKA SGATLLPVDS EHNAIFQCLP EEVQANLGRC DLAASGISHI
LLTGSGGPFL TAELASLASM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT
QKDQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMSYPQRIR SGVEPLDFFK
VGQLSFCEPD FNRFPCLALA IAACAQGQEA TTVLNAANEI AVEAFLQGQI GFTHIAKVNE
ACLSSVPKRA MTSIDDIIAL DAQTRIYARE QLAKFA
|
|---|
| |