| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2719 |
|---|
| Symbol | |
|---|
| ID | 4479123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3249328 |
|---|
| End bp | 3251304 |
|---|
| Gene Length | 1977 bp |
|---|
| Protein Length | 658 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727325 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_870352 |
|---|
| Protein GI | 117921160 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATCA AGTCGAGTAT TAATCCACCG GTTTTTTATT CGTCGGTCTT TTTTATCACC
TTAATGGTGA TGATCTGCGC CATTTGGCCT ACCGAGGCCA ATCACTTTTT CAAATCCATG
CAGTCTTGGC TAGAAGCGAA AGCAGGCTGG TTATATATCC TTGGCGTGGC GATTTTTCTG
ATTTTTATCA TCTTTGTCAT GGTCAGTCGC TTTGGCGATA TTAAGCTTGG CCCCGACCAT
GCTGTGCCCG ATTATAGCTA TAAGAGCTGG ATTGCCATGC TGTTTTCGGC GGGGATGGGG
ATTGGATTGA TGTTCTTCGG CGTTGCCGAA CCTGTGATGC ATTACTTAGC GCCGCCCGAT
GCAACGCCTG AGAGTTTGGC CGCCGCCAAA GAAGCGATGA AGATTACGTT CTTCCATTGG
GGCATACATG CATGGGCGAT TTACGGGGTG GTTGCCCTGA GTTTGGCCTA TTTTGCCTAT
CGGCATAAGC TGCCACTGTT ACCCCGCAGC GCACTCTATC CCTTAATCGG TGAGCGTATT
CATGGTCCGA TTGGCCACTG CGTCGATACC TTTGCGGTAT TGGGGACAAT GTTTGGGGTC
GCGACTTCCC TAGGGTTTGG AGTATTGCAG GTTAACTCGG GCCTAAGCTA TTTATTCGAG
CAACTGCCGA ATAACACCAC TGTGCAAGTG TCGCTGATTA TTGGCATTAC CTTACTCGCC
ACTCTGTCGG TATTTTCGGG GCTCGATAAA GGAGTGAAGC GCTTAAGTGA GCTTAACTTA
GGCTTGGCCC TTATCCTGTT GCTGATTGTG CTAATCCTTG GCCCAACGGT GATGTTGCTG
CAGGCCTTTG TGCAAAATAC CGGCAGTTAT CTCAGTGATA TCGTTAATAA AACCTTTAAT
CTGTACGCCT ATCAGCATAA GGAAGATTGG CTTGGCGGTT GGACGCTACT CTACTGGGGC
TGGTGGATCT CTTGGTCACC TTTTGTCGGC ACCTTTATTG CGCGGGTGAG TCGCGGCCGT
ACCATACGTG AGTTCTTAGT CGGCATTTTA TTTGTGCCTT CGGCGCTGAC CTTTTTATGG
ATGACGGTAT TTGGTAACTC GGCCATCGAC GCCATTATGA ATCAAGGCGC GACCTACCTG
AGCGAAGCGG TGAATACCAA TGTGCCCGTG GCTCTGTTTG TGTTTTTTGA ACATATGCCG
TTCCCGCATC TGTTATCGGG CATTGGGATT TGTTTAGTGG TGACCTTTTT TGTGACCTCA
TCAGACTCGG GATCCTTAGT AATCGACAAC CTGACCTCGG GGGGCGATAA CAATGCGCCT
GTCTGGCAAC GGGTGTTTTG GGCATTGCTG CAGGGCGTGG TGGCCTCGGT ATTGCTGCTT
GCGGGGGGGT TACAGGCGCT CCAAACCGCC GCTATTGCCA GTGCGATGCC ATTTTTATGT
GTGATGCTGC TGATGTGTTT AGGGCTGTAT AAGGCGCTGA AGGATGATTG GCTGAAAATC
AACAGCGTGC AGCTCCATAC CACCAGTGTG CAATATGCTA AGACCAATAT CAGTTGGGAG
GAGCGTATCG AAGTCTTAGT GTCGCATCCC ACCGAAGATG AGGCGCGTAT CTTCCTCAAT
AATGTCGCGA CACCGGCGTT ATCTAAGGTG TGTCAGCAAT TTATGAGCAA GGGCCTGACG
GCGGATCTTG AGTATCTCGA CGGCAAAGTG CGATTGGTGA TCAGTAACGA AGCCTATCAA
CCCTTCGTAT ACGGTGTGCG GATGCGCTGC TTTGAAATCG TTAATCCCGT CGGCGAAGAG
TTAGAGCAAG GCAACAATTG GTATTATCGC GCCGAAGTGT ACTTAGAGCA GGGCGGCCAG
CACTATGACG TGATGGGCTA TACCGAAGAG CAGTTATTGG CGGATGTGGT CACTCAATAC
GAGAAATACC TGCATTATTT GCACTTGTCC AATGCCGACC AAGGACATGT CGCCTAA
|
|---|
| Protein sequence | MSIKSSINPP VFYSSVFFIT LMVMICAIWP TEANHFFKSM QSWLEAKAGW LYILGVAIFL
IFIIFVMVSR FGDIKLGPDH AVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD
ATPESLAAAK EAMKITFFHW GIHAWAIYGV VALSLAYFAY RHKLPLLPRS ALYPLIGERI
HGPIGHCVDT FAVLGTMFGV ATSLGFGVLQ VNSGLSYLFE QLPNNTTVQV SLIIGITLLA
TLSVFSGLDK GVKRLSELNL GLALILLLIV LILGPTVMLL QAFVQNTGSY LSDIVNKTFN
LYAYQHKEDW LGGWTLLYWG WWISWSPFVG TFIARVSRGR TIREFLVGIL FVPSALTFLW
MTVFGNSAID AIMNQGATYL SEAVNTNVPV ALFVFFEHMP FPHLLSGIGI CLVVTFFVTS
SDSGSLVIDN LTSGGDNNAP VWQRVFWALL QGVVASVLLL AGGLQALQTA AIASAMPFLC
VMLLMCLGLY KALKDDWLKI NSVQLHTTSV QYAKTNISWE ERIEVLVSHP TEDEARIFLN
NVATPALSKV CQQFMSKGLT ADLEYLDGKV RLVISNEAYQ PFVYGVRMRC FEIVNPVGEE
LEQGNNWYYR AEVYLEQGGQ HYDVMGYTEE QLLADVVTQY EKYLHYLHLS NADQGHVA
|
|---|
| |