Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2584 |
Symbol | |
ID | 4479246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3087442 |
End bp | 3089244 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639727187 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_870217 |
Protein GI | 117921025 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.544743 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.120897 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGCAT CTCCTAAAGA CGAAATGTGG AAAGTTTTCA AACGATTACT GGGCTACCTC AAACCGATGA AGGGCATGTT TTTGCTTTCA GTTGTCGGCC TGATTGTATA TGGGCTTGTC GACGCGGCCT TTATTTCTTT TATCGGTCCT TTTATCGATA AAGGCTTTTC CAGTGCTCCT GCGATCAGTA ACGGTATCGC ACTCCCCACT AGCCAAGGCT TCCATGCCGA TAACCAAGTG TTATTAATGG CACCGATAGT GGTTATTTTA ATGTTTTCCC TGCGCGGTTT TGCGAACTTT GTCTCCACCT ACGGCATTTC TTACATGAGT GCGCGTTTGA TCATGGATAT GCGTCAGCAG GTGTTTGAGC ATTATCTAAG CTTGCCCGTG AGCTACATGG ACAAAGAAAA CACCGGGAAC TTGATTTCAA AAGTCACCTT CGATACCGAA CAAATTGCCC GCGCATCGGG TAGTGCCTTG ATCTCCATCG TACGTGATGG GGTGACGGTT ATCGGTATGC TTGCGCTGAT GTTTTATAAC TCTTGGAAGC TTTCCCTCTG TATTTTAGTG ATTGGCCCAA TTATGGGGTT GGTGATCACT ATTGTCAGTC GCCGCTTCCG TAAGGTATCG AAACAAATCC AAACGGCGAT GGGCGATGTC AGTGCCGCCA CCGAGCAGAT GATCAAAGGC CATAAAAACG TCTTGGCCTT CGGCGGGCAA GAAACCGAAA CGGCGCGTTT TGCCAAAGTG AATGACAGAA ACCGTCATCA AAACATGAAA CTCGCCGTGG CGCAGGCCAT TAGCCAGCCG CTGATCATGG TGATTGGCTC CTTTGCCTTG GCCTTTGTGC TGTATGCGGC GAGCCTCGAT AGCATGAAAG CCGATTTGAC CGCAGGTACC TTCGCGACCA TCCTTGGCGC TATGATGGCC ATGCTGCAAC CTATCAAAAA CCTCACGCGT GTGAATGCCG AATTTCAGCG CGGTATCGCG GCCTGTACCA CGGTCTTTGA ATTGTTAGAC ACTTTGCCTG AATCCGATAC GGGGACTTAT ACCGTCAAGC GTGCTAAGGG CAACTTACGT TTTGATAATG TGTCCTTCAG CTACGACGGG CAGGAGCGCC GCGCCTTAGA TAATATCGAT TTCGAGGTCA CCCAAGGGCA AACCTTGGCC TTGGTCGGAC GTTCTGGCTC GGGTAAATCC ACTATCGCCA GTCTGGTGAC ACGTTTCTAC ACTGGCTTGG AATCTGGCGA CATTCTGCTC GATGATGTCA GCATCTATGA TTACTCATTG AAATCATTGC GTAATCAAGT AGCACTTGTG TCGCAGCAAG TGACGTTGTT TAACGATACC ATTGCTAATA ACATCGCCTA TGCCTATCCC GGCGAAGCGA CCCGCGAGCA GATTATTCAA GCGGCGACCT TGGCCCATGC GATGGAGTTT ATCGAGCAAC TGCCCGAAGG TTTAGATACC CAAGTGGGTG AAAACGGCGT GTTATTATCG GGCGGTCAGA GACAACGTAT CGCGATTGCC CGCGCTATGC TGCGCGATGC GCCTGTGCTG ATCCTCGATG AAGCCACCTC AGCACTCGAT ACCGAATCTG AGAAGGCGAT TCAGCAAGGG CTGGATAATC TTCGTCAAAA CCGCACCTCG GTCGTGATTG CCCACCGTTT GTCGACCATT GAAAGTGCCG ATCAAATTTT AGTGGTCGAT CAAGGTCGTA TCGTTGAGCG CGGTACCCAT AAATCCCTGC TGGAACTTGG CGGCATGTAT GCCAAGTTAT ACCAAATGCA GTTTGGTAGC TAA
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Protein sequence | MTASPKDEMW KVFKRLLGYL KPMKGMFLLS VVGLIVYGLV DAAFISFIGP FIDKGFSSAP AISNGIALPT SQGFHADNQV LLMAPIVVIL MFSLRGFANF VSTYGISYMS ARLIMDMRQQ VFEHYLSLPV SYMDKENTGN LISKVTFDTE QIARASGSAL ISIVRDGVTV IGMLALMFYN SWKLSLCILV IGPIMGLVIT IVSRRFRKVS KQIQTAMGDV SAATEQMIKG HKNVLAFGGQ ETETARFAKV NDRNRHQNMK LAVAQAISQP LIMVIGSFAL AFVLYAASLD SMKADLTAGT FATILGAMMA MLQPIKNLTR VNAEFQRGIA ACTTVFELLD TLPESDTGTY TVKRAKGNLR FDNVSFSYDG QERRALDNID FEVTQGQTLA LVGRSGSGKS TIASLVTRFY TGLESGDILL DDVSIYDYSL KSLRNQVALV SQQVTLFNDT IANNIAYAYP GEATREQIIQ AATLAHAMEF IEQLPEGLDT QVGENGVLLS GGQRQRIAIA RAMLRDAPVL ILDEATSALD TESEKAIQQG LDNLRQNRTS VVIAHRLSTI ESADQILVVD QGRIVERGTH KSLLELGGMY AKLYQMQFGS
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