| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2431 |
|---|
| Symbol | |
|---|
| ID | 4477239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2914549 |
|---|
| End bp | 2915538 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639727028 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_870066 |
|---|
| Protein GI | 117920874 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.966679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTAG TACTCCCTTT AATTGCACGG CTGCGAACCA TGACAAAAAT TGCCCCACAA
CACGCCGAAA CGGGTTCCGA TACCAACCAT AGTCAAGCCA TTGATACTAT TTTAAATAGT
CTCGATGCGC TGGTTTATGT CTCTGATTTA GATACCTATG ATTTACTCTA TCTCAATGAC
TACGGTGTAT CGGTTTGGGG TGAGGCAAAA GGTAAAAAGT GCTATCAAGT GCTGCAATCG
GCACAACACT CGCCTTGTCA ATTTTGTACT AACCCTAAAC TATTGGATGA AAAGGGAAAT
CCTGCTGGCG TTCATGTGTG GGAGTTTCAA AACACCCAAA ATGGCCGTTG GTACCAATGT
CGCGATCAAG CCATTCATTG GACCGATGGC CGATTAGTTA GAATCGAAAT CGCCACCGAT
ATCACCGAAC GCAAACAAAT GGAGCAAGCG CTGATAGAGG CAAAATCCAC GGCCGAGCGC
CTTGCCGACA CTGACGAACT GACCCAACTC TATAATCGCC GGGCTTTTTT CAATCTCGGT
CGCCAAATTG CGCAACAAAC AGCACAACCA CTGGCCTTTA TCATGTTCGA TATTGATCAC
TTTAAGCGGA TTAACGACCG CTGGGGCCAT GCGATGGGTG ATGCGGCGCT TATCCATATC
GCAAGATTGA CGCAAACCAA ACTGAGAACA AATGATATTC TTGCTCGTTT AGGCGGCGAA
GAGTTTGGGC TGATTTTACC CAACACTCAC CATGAGCAAG CATGGCAAGT GGCGGAGTCA
ATTCGACACG GGTTTGATAC GCAGCCACTA CAGCTTAACG GCCACAGCAT CCACTGCACA
GCAAGCTTTG GCATATCATC CTTGGTCTTG CCTCAAATCA ATCATCCCGA TGAGGCACAA
ACCCTCTTGG AAACCCTATT CAATAATGCC GATCAGGCCA TGATGCAAGC CAAGCGAGCA
GGTAGAAATC AAGTCTGTGA TGCGGTCTAA
|
|---|
| Protein sequence | MLLVLPLIAR LRTMTKIAPQ HAETGSDTNH SQAIDTILNS LDALVYVSDL DTYDLLYLND
YGVSVWGEAK GKKCYQVLQS AQHSPCQFCT NPKLLDEKGN PAGVHVWEFQ NTQNGRWYQC
RDQAIHWTDG RLVRIEIATD ITERKQMEQA LIEAKSTAER LADTDELTQL YNRRAFFNLG
RQIAQQTAQP LAFIMFDIDH FKRINDRWGH AMGDAALIHI ARLTQTKLRT NDILARLGGE
EFGLILPNTH HEQAWQVAES IRHGFDTQPL QLNGHSIHCT ASFGISSLVL PQINHPDEAQ
TLLETLFNNA DQAMMQAKRA GRNQVCDAV
|
|---|
| |