| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2428 |
|---|
| Symbol | |
|---|
| ID | 4477236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2910383 |
|---|
| End bp | 2912173 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639727025 |
|---|
| Product | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| Protein accession | YP_870063 |
|---|
| Protein GI | 117920871 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3083] Predicted hydrolase of alkaline phosphatase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0457746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGAGC GAAAAAAGCA AATGAGCCGC GATCGCGTGT CACGACTCAT CAACTGGGGA
CATTGGTTCG CCTTCTTTAA TGGCCTGTTG GCCATGATTG TCGGCACACG CTATCTGAGC
AGTGTGGGTT ATCCCGAAAC CTGGTTTGGC TGGGGCTACC TCGCCGTCAG CACCATTGGC
CAGTTCAGTT TTCTTGCTTT TATCGCCTAC TTGATCTGCC TATTCCCGCT GACCTTAATC
TTGCCTTATT CCAAGATTTT AAGGGGCTTA GCGGCAGTTA TCGCCACCTT AAGCCTGTGT
ATCTTACTGT ACGACACCAT AGTGTATGCC GATTATGGCA TGCACTTGAG CCCCTTCGCC
TTCGACTTAG CCTGGGCCGA TTTAAATGCC CTGCTCCACG GTACCTCTTA TATTGTCACG
CCTATCGCCA TTTTGGTGAT TGAGCTAACG GCGGCCAACT TCCTGTGGAA ACGGATTGAG
AAAATCCAAA AGCTAAATCT TGGCAATAAG GTCATTACCC TGATTGGGGT GTGTTTTGTC
AGCAGCCATT TGATCCACAT TTGGGCCGAC GCGGCCGATA TCACCGAAAT AACCCGTTTC
GATGATACTT ATCCGCTGTC ATACCCCGCC ACGGCGCGCT CCTTTATGGA AAGCCATGGT
ATTGATGGCT CTTCACAATC GGATGATGAA GCCAATCATG CGACCAGCAC GCTCAGTTAC
CCCACGCAGC CACTACAGTG TCAAGCCGAC AGCAAACCCA ATGTGTTAAT GCTGACCATC
GACAGCTTAC GTGCCGACAT GGTGGACGCT AAGACCATGC CGTTTTTGCA TCAATACACT
GAGCAGAATC AGAGCTTTAC CCAGCATTAC AGTGGCGGCA ATCAATTTAG AACCGGCATG
TTTTCCCTTC TCTATGGCTT GCAAGGCAGC TATGGCGATG CGCGCATCTT CAATAGCACT
AGCCCCATCA TGACCCAAAG CTTTAGACAG GCGGGTTATC AGCTTGGCTT ATTTATCCCA
GAAACCAATC TGAATTTACG CTCCGCGCAG GCCATGTTTA ATGACTTTAC CCCAGTCATC
GCCAAAGAAA CCAATGGCAG TGCCGATGCG GATTTACGCA GTGTAGGCCA CTTTAAGCAA
TGGCAAAGCG AGCAACAGAG CCCATGGTTC GCCCTCGTCA ACCTGAAGGC ACCAGAGAAT
TTTGATACCC CAGTCGGCTT CCTTGGCATC GAAACCGTTA AGGCCGATGC CAATTTGAAA
CCCGCACAAA AGGTGCTGTT TAACCAATAT CGCCAATCGT TGAATTTTAT TGATAAACAA
ATCCAAGCGA TAGTGAGTGA GTTGCCGAGC GATACCTTAG TGGTGATCAC TGGCGTTAAC
GGCAAGATAT TCACCAGCAA CAGCGATGAA GCCCAGCGCA ATTTGTCTCC CGAGAGTGTC
AGAGTGCCTA TGGTTATTCA TTGGCCGAAT GTCGGCGCCA GTAAGGTTAA ATACCGCACC
AGTCACTATG GCGTAGTGCC AACCTTGATG ACCCATATCT TAGGTTGCAC CAATAACACC
ACTGACTACA GCGCGGGCCG TAGCCTACTG CAACCGAGCC AAGAGACCTG GATTTACATC
GGTGACAGTC GCATATTTGC CATTTACCAA CAGTCGGAAA TCACCGTCAT CGACCGCCAT
GGTAAATACC GCATTTACGA TGAAAACTTT GAGCACAGAC TGCATAAGAA GATGAGTGCG
CCCGAGCTTA TCCAAGTGAT GCGAGAAGGC CGTCGCCTCT ATAATCATTA A
|
|---|
| Protein sequence | MVERKKQMSR DRVSRLINWG HWFAFFNGLL AMIVGTRYLS SVGYPETWFG WGYLAVSTIG
QFSFLAFIAY LICLFPLTLI LPYSKILRGL AAVIATLSLC ILLYDTIVYA DYGMHLSPFA
FDLAWADLNA LLHGTSYIVT PIAILVIELT AANFLWKRIE KIQKLNLGNK VITLIGVCFV
SSHLIHIWAD AADITEITRF DDTYPLSYPA TARSFMESHG IDGSSQSDDE ANHATSTLSY
PTQPLQCQAD SKPNVLMLTI DSLRADMVDA KTMPFLHQYT EQNQSFTQHY SGGNQFRTGM
FSLLYGLQGS YGDARIFNST SPIMTQSFRQ AGYQLGLFIP ETNLNLRSAQ AMFNDFTPVI
AKETNGSADA DLRSVGHFKQ WQSEQQSPWF ALVNLKAPEN FDTPVGFLGI ETVKADANLK
PAQKVLFNQY RQSLNFIDKQ IQAIVSELPS DTLVVITGVN GKIFTSNSDE AQRNLSPESV
RVPMVIHWPN VGASKVKYRT SHYGVVPTLM THILGCTNNT TDYSAGRSLL QPSQETWIYI
GDSRIFAIYQ QSEITVIDRH GKYRIYDENF EHRLHKKMSA PELIQVMREG RRLYNH
|
|---|
| |