Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2087 |
Symbol | |
ID | 4476333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 2504405 |
End bp | 2505256 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639726672 |
Product | LysR family transcriptional regulator |
Protein accession | YP_869723 |
Protein GI | 117920531 |
COG category | [R] General function prediction only |
COG ID | [COG5006] Predicted permease, DMT superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.632032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000953173 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACTGTTT TTCGTCTATT TACGCTGACA ACGCTCACCA TGTTTGCCTT TGCCTGTAAC TCGATACTTT GCCGGCTCGC GTTAAAGGAT GGCAGTATCG ATGCGGGCAG CTTTACCCTG ATCCGGTTGT TATCGGGTGC CATCATGCTC TGGCTATTAA GCCTTAACAA ACCTGCGCTG GAGGCCAAGG GACATTGGGG CTCAGCCTTG GCATTGTTTG TCTACGCAGC CGGATTTTCC TACGCCTATA TCAATATGAC GGCCTCAATG GGTGCGCTGT TACTCTTTGG CGCCGTACAA GCCACCATGA TTGGCTATGG GCTGTACCGA AAAGAAATCT TTAATACCAG ACAATGGCTT GGATTGGCCT GCGCCGCTGC CGGTTTGATT TTTCTGCTGT TACCTGGGCT GTCGGCGCCG CCACTAATGA GTTCATTGCT GATGATAAGC GCTGGGGTCG CTTGGGGGAT TTATTCGATT AAGGGTAAGG GAGCCAAGCA TCCCATTCCT GTCAGTGCAG GCAACTTTAT CCGCACTGTG CCGATGGCAC TGTTATTAAT GTTATTAGTT CGAGATCCCT TAGCAGTAAG TCAGATGGGA ATTATCTATG CGTTAGCCTC GGGCGCCATC GCTTCAGGCT TAGGTTATGC GATTTGGTAT TCCATTTTAC CTTTATTGTC ATCCACCTAC GCCGCCACTG TACAGTTGAG TGTGCCGTTA ATTGCCGCGG TTGGCGGAGT GCTATTGCTG GGTGAACCCC TAAGCCTTCG ATTACTGCTA GCCTCCTGTG CCATCCTCGG TGGCATTGCA CTTGTTGTCC TCAGCAAATC TGAACCACAA AATAAAAGCT AA
|
Protein sequence | MTVFRLFTLT TLTMFAFACN SILCRLALKD GSIDAGSFTL IRLLSGAIML WLLSLNKPAL EAKGHWGSAL ALFVYAAGFS YAYINMTASM GALLLFGAVQ ATMIGYGLYR KEIFNTRQWL GLACAAAGLI FLLLPGLSAP PLMSSLLMIS AGVAWGIYSI KGKGAKHPIP VSAGNFIRTV PMALLLMLLV RDPLAVSQMG IIYALASGAI ASGLGYAIWY SILPLLSSTY AATVQLSVPL IAAVGGVLLL GEPLSLRLLL ASCAILGGIA LVVLSKSEPQ NKS
|
| |