| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2071 |
|---|
| Symbol | |
|---|
| ID | 4476317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2479274 |
|---|
| End bp | 2480044 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639726656 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_869707 |
|---|
| Protein GI | 117920515 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00640028 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000248708 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGA CTAATCAATA CCCGAGTTTA CAAGGGAAAA CCATTTTTAT CAGTGGTGGC
GCAACGGGTA TTGGGGCTTG CTTGGTTAAT GCTTTTTTAG AGCAGGGCGC TAAGGTGGCA
TTTGTCGATA TTTTAGTTGA GGAGTCAACT CAACTCGTCG CAGACCTTAA GCAGACTCAA
CCAGAGGCCA GCGTAACATT TTATCACTGC GATCTTGTCG ATATCGCCGC CCTCAAGCGT
GTGATTGCTC AGGTCGAGGA CGATTTAGGC CCAATATCAG TATTAATTAA CAATGCCGCG
TGCGATCAAC GCCATAGCAT CGACGAAGTG ACCCCAGAAT ATTGGGACCA ATGCCTAAAC
ACCAATTTGC GGCATTACTT TTTCGCCGTA CAAGCGGTCA GGCCGCAAAT GCAGCGCCTC
GGCGGAGGCT CAGTGATCAA CTTAGGTTCA ATGAGTTGGC ACAATCGGCA GGCGGGCATG
GCGGGTTACA CCGCATCTAA GGCCGGCGCC ATGGGCTTAA CTCGAGGGTT AGCTGCCGAT
TTAGGTAAAG ATAAAATCCG GATTAATACC TTAACGCCGG GTTGGGTGAT GACAAAACGT
CAACTCACGC ACTGGGTAGA TAAAGATACG GCAAAACATA TCGAAAATAA CCAATGTATT
AAAGAATATG TGATGCCCGA AGATATTGCT GCTATGGCGT TATTTTTAGC AGCAGATGAT
AGCAAACTCT GCACCGCACA GAATTTTATT GTCGATGGTG GTTGGATTTA A
|
|---|
| Protein sequence | MKLTNQYPSL QGKTIFISGG ATGIGACLVN AFLEQGAKVA FVDILVEEST QLVADLKQTQ
PEASVTFYHC DLVDIAALKR VIAQVEDDLG PISVLINNAA CDQRHSIDEV TPEYWDQCLN
TNLRHYFFAV QAVRPQMQRL GGGSVINLGS MSWHNRQAGM AGYTASKAGA MGLTRGLAAD
LGKDKIRINT LTPGWVMTKR QLTHWVDKDT AKHIENNQCI KEYVMPEDIA AMALFLAADD
SKLCTAQNFI VDGGWI
|
|---|
| |