| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1790 |
|---|
| Symbol | |
|---|
| ID | 4477478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2116330 |
|---|
| End bp | 2118324 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639726373 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_869429 |
|---|
| Protein GI | 117920237 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.119789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.182995 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGGC AATGGATTGG CAACCTCAGC TTAAAGCAAA AATTACTTAT GGTTGTATTG
CCACCGTTAT TTGCGTGTTT TCTGTATGGT GCGTTGTTTC TCATTGAAAA ATATGAATAT
CGTCAAGAGC TCAAGCTGAT TGTGCAATTG AGTGAACTGG CCGTCACCAA CAGTAACTTG
GTGCATGAAT TACAAAAAGA GCGCGGCATG AGCGCTGGCT TTATTGGCTC AGCCGGTAAA
GCCTTTGCAG GCAAAATTCC TGGTCAAAGA CAGTTGACCG ACACTCAGTT GAGACAATTC
CAGGATTTCA TTGCAAACAA TGCGTTACCC GAAGTATTTG CGCCTAAGTT GCGGGAGATA
AACACCCAAC TTGGCCGCCT TTCTAGCATA CGTTCTCAGG TCGATAGCCT ATCCATTAGT
GTGGCCGATG AAGTGGCCTA TTACACCGAC TTAAACAAAC AGCTATTAGC CATCGTCGAT
GAAACGGCAA AGGCGGGGGC TAACCAAGAA ATTGCCATTA AGGCTGCAGC ATTCAGTGCC
TATCTACAGA TGAAGGAGAG GGCGGGGATT GAGCGGGCGG TACTGAGTTC AACCTTCGGA
CAAGCAGGCT TTAAGCCTAA GGTTTATGCC AAGTTTATTA CCTTAGTCTC TGAGCAAAAT
ACGTATCTTG AGCGCTTCTT GGCGCTGGCC ACGCCCAATT TGGTGGATGG TATTCGCCAG
CTGCAAAATG GTAACGAAGT TAAAGAGGTT GAGGCATTAA GACAAATAGC AACCGATCAA
GATAATCAGA AAATTCAACA ACAAAACCCA GAGGATTGGT TTGCTAAATC CACGGCGCGT
ATCGACCGTT TGCGTGACTT TGAGCAACAA GTTTCTGCTG ATCTGTTAAA AACCACCACA
GACCGACTCT TTACTGCCAA CAAGCATATG TTCTTCGTGC TGGTGACCTT AACTGTGGTG
CTAGTCTTAG TGTTATTGCT GAGTTTGTCG GTGATCCGTT ATCTACACGA CAGTGTGCAT
CATGTGTATT CGACGGTGAC CAAGGCAAGA AAACATTATG ATCTTAGTGT GCGCTTAACC
CAAAACAGCT CGGATGAATT TGGGGAATTA GCCATTGCAT TCAACGATAT GATGAATGAT
TTCGAGAGTG TTATCCTGCA AGTGCGTGCT AGCGCTAGCA AGTTACAGCA AGCGGTAGAG
CAAATGGATG TGTGCACCCA CGCAATGGAG CAAGATGTGA TGGCAGGGCA CAGTGAGGCT
GAGCAAGTGG CCTCGGCAAT GACAGAGATG AGCGCAACCG TGGCAGAAAT CGCCAGTAAC
GCCGTTAATG CCTCGGAAGC TTCCACCGCG GCGAACCATG AAGCGAAAGC GGGTAATATC
GAAGTGGGCC GCACCAGTGC CGCCATTAAG GCTTTAGCCA ATGATATTGA TGGCGCCTCT
AAAGCCATTA ATGAACTCGA CCGTGAAATC CACGGTATTG TGGTGGTGCT CGATGTGATC
AGCGGCATCG CCGAACAAAC GAATCTACTC GCGCTTAATG CGGCAATTGA AGCGGCAAGG
GCTGGCGAAA TGGGACGAGG CTTTGCTGTA GTGGCCGATG AGGTGCGAAG CCTCGCGCAG
CGCTCACAAA CCTCGACCTC GGATATTAAG AACATGACGG ATAGACTCAA ATCGGGTGCC
AGCATCGCCG TTAAAGCGAT GGAGCGCGGG CTGATGCAGG CCAATAACAG CGTGCACGAA
GCCGAGCAGG CGGGGATTGA GCTTAAACGC ATCGTAGAGC AAGTGGATAT TATCGACCGC
ATGAATGAAC AAATTGCCAC GGCAACCCAT GAGCAGTCTG CCGTGTCAGA GGATGTGAAT
CGCAATGCAT TAAAAATCAG TGAAATTTAC CTCAATACCC AGAGGATTTC GGATGAATTA
CGGGAATTGA CCAAAGCACT GACCTACGAT GCGGCCTTAA TGTCTAAGGA AGTGAACAAG
TTCCACGTCA ATTAA
|
|---|
| Protein sequence | MKWQWIGNLS LKQKLLMVVL PPLFACFLYG ALFLIEKYEY RQELKLIVQL SELAVTNSNL
VHELQKERGM SAGFIGSAGK AFAGKIPGQR QLTDTQLRQF QDFIANNALP EVFAPKLREI
NTQLGRLSSI RSQVDSLSIS VADEVAYYTD LNKQLLAIVD ETAKAGANQE IAIKAAAFSA
YLQMKERAGI ERAVLSSTFG QAGFKPKVYA KFITLVSEQN TYLERFLALA TPNLVDGIRQ
LQNGNEVKEV EALRQIATDQ DNQKIQQQNP EDWFAKSTAR IDRLRDFEQQ VSADLLKTTT
DRLFTANKHM FFVLVTLTVV LVLVLLLSLS VIRYLHDSVH HVYSTVTKAR KHYDLSVRLT
QNSSDEFGEL AIAFNDMMND FESVILQVRA SASKLQQAVE QMDVCTHAME QDVMAGHSEA
EQVASAMTEM SATVAEIASN AVNASEASTA ANHEAKAGNI EVGRTSAAIK ALANDIDGAS
KAINELDREI HGIVVVLDVI SGIAEQTNLL ALNAAIEAAR AGEMGRGFAV VADEVRSLAQ
RSQTSTSDIK NMTDRLKSGA SIAVKAMERG LMQANNSVHE AEQAGIELKR IVEQVDIIDR
MNEQIATATH EQSAVSEDVN RNALKISEIY LNTQRISDEL RELTKALTYD AALMSKEVNK
FHVN
|
|---|
| |