| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1710 |
|---|
| Symbol | sucA |
|---|
| ID | 4479543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2012652 |
|---|
| End bp | 2015471 |
|---|
| Gene Length | 2820 bp |
|---|
| Protein Length | 939 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726293 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_869349 |
|---|
| Protein GI | 117920157 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.150842 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCAAG GCATCATGAA AGCCTGGCTC GAATCATCTC ACTTAAGTGG TGCAAATTCG
ACCTACGTAG AAGAGATGTA TGAAGCCTAT CAAGAAGACC CACAGTCAGT CTCTGACGAT
TGGCGTGCGG TATTTGATAA TCTCCCTCCG GTGAACGGTG CTTCTAAAGA CGCGCCTGAA
GCGGCTCACT CCAAAGTACG TGATTATTTT CGCAGTTTAG CGATGGACGG ACGTCATAAG
AGCGCAGCTC GTGTGACCGA TCCTGAGTTG GATGCTAAGC AAGTTAAAGT GCTACAGCTG
ATCAACGCCC ACCGTTTCCG TGGTCACCAA GGGGCTAACC TCGACCCGTT AGAATTGTGG
AAACGTGAAC CTGTTGCCGA TTTAGATCCC GCATTCCACG GTCTGACCAA AGAAGACATG
GAACGTGAGT TCAACACTGG CTCGTTCGCC CACGGCGGCG AAACCATGAA GCTGGCTGAC
TTAGTCAAAG CGCTAAAAGC CACTTACTGT GGTTCGATTG GCGCCGAATA CATGCACATT
ACCGATACCG ATGAGAAGCG TTGGATCCAA CAACGTCTCG AACCATCCTT AGGTAAAGCC
AACTACGATA AAAGCGTTAA GACCCGCATT CTCGAAGGCC TAAATGCTGC TGAAGGCATT
GAAAAATATT TAGGCGCTAA ATTCCCTGGT GCAAAACGCT TCTCGTTAGA AGGCGGCGAT
GCGTTAGTCC CTATGATGCG CGAAATCATT TACCGCGCAG GCGAAGCGGG CACTAAAGAA
ATCGTAGTCG GTATGGCTCA CCGTGGTCGT TTAAACGTAC TGGTGAACGT GTTAGGTAAG
CGTCCAGCAG AACTGTTTGA CGAGTTCGCC GGTAAGCACG CCGATACCCA CGGTTCAGGC
GACGTAAAAT ACCACCAAGG CTTCTCTTCA GATTTCGAAA CGCCGGGCGG CAACGTGCAC
TTAGCACTGG CCTTTAACCC ATCACACCTT GAAATCGTTA ACCCTGTGGT TATGGGCTCT
GTCCGTGCTC GTCAAGACCG CCGTGGTTGT AAAGACGGTT TACAGGTGAT GCCAATTACG
ATTCACGGTG ACTCTGCAAT TGCTGGTCAA GGTATCGTGC AAGAGACATT CAACATGTCT
CAAACCCGTG GCTTTAAAGT GGGCGGAAGC ATCCGTATCG TTGTAAACAA CCAAGTTGGT
TTTACAACGT CAAACCACTT TGATGTGCGT TCAACTGAAT ACTGTACTGA CATCGCTAAG
ATGGTTCAGG CACCGATTTT CCACGTGAAC TCTGACGATC CAGAAGCCGT TGCCTTTGTT
GCTCAGCTTG CTGTTGATTA CCGTAACGAG TTTAAACGTG ACGTGGTGAT TGACTTAGTG
TGTTACCGTC GTCATGGCCA CAACGAAGCT GACGAGCCAA GTGCAACTCA GCCATTGATG
TATGCCAAGA TCAAGAAACA CCCAACGCCA CGTAAGATCT ACGCTGACAA ACTGATCGCT
GAAAACAGCA TCGGCGCTGA TGAAGTGACC AGCATGATCA ACACCTACCG TGACGCCTTA
GACCAAGGTG ACTGTGTGGT GAAAGAATGG CGCCCAATGA CACTGCACAC AGTGGATTGG
ACTCCTTACA TTGGCCGTGA GTGGGACGAA GTGTATCAAG CATCTCTACC ACTTGAGCGT
CTGCAAAATC TGGCTGACAA GCTCAGCTAC GTGCCAGAGA GCCACCCACT GCATTCACGC
GTTGCTAAGA TTTACGGCGA TCGCGTTGCT ATGGCGAAGG GCGAGAAATT ACTCGACTGG
GGCTTTGCTG AAACCTTAGC GTACGCCACG ATTCTTGAAG ACAACAAGCG CGTTCGCATT
ACGGGTCAAG ACTCTGGCCG TGGTACTTTC TTCCACCGTC ACGCGGTTCT GCACAACCAA
AACGATGCAA CCACCTATAT GCCGCTGCGC AACTTGTCTG AAGACCAAGG TCCAATCGAC
ATCACAGACT CAGTATTGTC TGAAGCGTCA GTACTGGCCT TCGAATACGG CTACACCACA
GCAGAGCCTG GTGGTCTGGC GATTTGGGAA GCTCAATTCG GTGACTTCGC TAACTGTGCG
CAAGTGGTTA TCGACCAGTT CCTGTCGTCT GGTGAGCAGA AGTGGGGCCG TTTATGCGGT
TTGACCATGC TGTTACCACA CGGTTACGAA GGTCAAGGTC CAGAACACTC AAGTGCCCGT
TTAGAGCGTT TCTTGCAGCT GTGTGCTAAC CACAACATGC AAGTGTGTGT GCCATCAACG
CCAGCACAGG TTTACCATAT GCTGCGTCGC CAAGTGGTGC GCCCAATGCG TCGTCCACTG
GTGGTGATGT CACCTAAGTC ATTGCTACGT CACCCATTAG CGGTTTCTAG CATGGAAGAA
TTGGCTAATG GCACCTTCCA AAACGTGATC GGTGAAATCG ATACGTTAGA AGCGAGCAAA
GTCGATCGCG TCGTGTTCTG TAGCGGTAAG GTGTACTTCG AGCTACTGGA AAAACGCCGT
AAAGAAAACA TCAACAACAT CGCAATAATC CGTGTCGAAC AGTTATATCC GTTCCCACAT
GAAGAAATGG TTGCAGCCTT AGCTGACTAC CAACATGTGA CCGATTTTGT ATGGTGTCAG
GAAGAGCCGC AAAACCAGGG TGCTTGGTAC TCTAGCCAAC ATCACTTCTG GGCTGCTATC
CCTGCGGGTG CAAAACTGAC CTATGCTGGC CGTGAAGCAT CTGCTGCACC AGCCTGTGGT
TACCCTGAGC TGCATGCTCA CCAACAAGAA TCTTTAGTGA ACAGTGCCCT AAAGCTGTAA
|
|---|
| Protein sequence | MHQGIMKAWL ESSHLSGANS TYVEEMYEAY QEDPQSVSDD WRAVFDNLPP VNGASKDAPE
AAHSKVRDYF RSLAMDGRHK SAARVTDPEL DAKQVKVLQL INAHRFRGHQ GANLDPLELW
KREPVADLDP AFHGLTKEDM EREFNTGSFA HGGETMKLAD LVKALKATYC GSIGAEYMHI
TDTDEKRWIQ QRLEPSLGKA NYDKSVKTRI LEGLNAAEGI EKYLGAKFPG AKRFSLEGGD
ALVPMMREII YRAGEAGTKE IVVGMAHRGR LNVLVNVLGK RPAELFDEFA GKHADTHGSG
DVKYHQGFSS DFETPGGNVH LALAFNPSHL EIVNPVVMGS VRARQDRRGC KDGLQVMPIT
IHGDSAIAGQ GIVQETFNMS QTRGFKVGGS IRIVVNNQVG FTTSNHFDVR STEYCTDIAK
MVQAPIFHVN SDDPEAVAFV AQLAVDYRNE FKRDVVIDLV CYRRHGHNEA DEPSATQPLM
YAKIKKHPTP RKIYADKLIA ENSIGADEVT SMINTYRDAL DQGDCVVKEW RPMTLHTVDW
TPYIGREWDE VYQASLPLER LQNLADKLSY VPESHPLHSR VAKIYGDRVA MAKGEKLLDW
GFAETLAYAT ILEDNKRVRI TGQDSGRGTF FHRHAVLHNQ NDATTYMPLR NLSEDQGPID
ITDSVLSEAS VLAFEYGYTT AEPGGLAIWE AQFGDFANCA QVVIDQFLSS GEQKWGRLCG
LTMLLPHGYE GQGPEHSSAR LERFLQLCAN HNMQVCVPST PAQVYHMLRR QVVRPMRRPL
VVMSPKSLLR HPLAVSSMEE LANGTFQNVI GEIDTLEASK VDRVVFCSGK VYFELLEKRR
KENINNIAII RVEQLYPFPH EEMVAALADY QHVTDFVWCQ EEPQNQGAWY SSQHHFWAAI
PAGAKLTYAG REASAAPACG YPELHAHQQE SLVNSALKL
|
|---|
| |