| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1534 |
|---|
| Symbol | |
|---|
| ID | 4477430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1788543 |
|---|
| End bp | 1791095 |
|---|
| Gene Length | 2553 bp |
|---|
| Protein Length | 850 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639726104 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_869174 |
|---|
| Protein GI | 117919982 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000274946 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAGAC GCATTCGGGT GATTATTAGC TTACTAATAT TCACAGTCTC GTTATTGCTT
TTGTATAACC TTGAGCAGGA TTATCAACTA AATGATATTT TGGCTGAGGT TAAATTATTT
TCATTTTCAC AGCTTGCGCT TGCCGTTGCA TTGACTGTGA CAAGCTACTT AATGTTGACC
TTGTATGATT ATCTTGCGAT TAAACAACTT GGCTCATCAT TAAGTTATCA AAAGGTCGCT
CCCGTTTCAT TTTTAGCCTT TACCTTTTCC AATACCATAG GGTTTTCATT ACTCACAGGC
ACTTCGATAC GCTATAAGTT TTATTCAGAG TTAGGGTTAA CCGGTAATCA AATTACTCAA
ATAGTGCTCG CCTGCTCGGT GACTTTTTTC CTCGGGTTTT TCTTTATTTG TGGTATCGCG
CTGATTAACT TCCCGGCGCA GCAACTGGCT GATTTGCCGT TGCCGACGTG GTTGTTTTCC
TTAAGCCGCG TGTTTGGTGT TCTGATGCTG CTCGGTGTCG TAGGCTATTT TCTGTTTAGT
CTATTGCGTA AAAAACCGAT TTATTTTCGT GGGTTTGAGT TTGCGCCTCC CGTACTGTCT
CAGTCGTTAA AGCAATTTGT GGTTTCGACA CTCGATTGGT TAGTGGTGGG AACATTATTC
TATTCCCTGC TGCCTGCGGT GGATGGTTTA AGTTACCTTC AAGTGCTCAG TATTTTCTTT
GTGGCGAATG CCATCGGGGT GCTTGCCCAT GTGCCTGGAG GGATTGGTGT TTTTGAATCT
GTGGTTACAG TGACCTTATC CCAGTATTTA CCCGTTGAGC AAATACTGGG CTCGGTGATT
GTGTATCGGG TCATTTATTA TATTGTGCCT TTTATGCTGG CCCTGATTTA TTTTGTGGCA
GGCTTGGTAT TAAATAATAA GGATAAATTA TCTAAGATAA ATATTGATTT ACATATTGTC
AGGCAGTTAT TGCCACCACT ATTAAGCATT AGTGTGTTTT CCGTCGGGTT AGTTTTATTG
CTGTCAGTGG TTAACCCTTC CATTGTGCAT AAATATCATT GGCTAGGGGA GATAGTGCCG
CTGCCGATAG TCGAATTGTC GAGCTTAATA TTGAGTGCCA GTGGTATTTT ACTACTGTTA
TTATCCCATG GCTTGTTTAA GCGTTATAAA AAAGCCTTCA TACTCACCCA AAAGTTGTTA
TTAGTAGCCA TTGTTTTTAT TGTGCTTAAG GGTGCAGAGT GGCAGATTTC CCTAGCACTC
GGTCTTATCT ATTTATTAAT GCTGCCCTGT GAACAGGTGT TTTATCGCCA AGGTTCGATT
GTGGGTGTTA AATATTCCTT CGGCTGGTTA TTATCCCTCG CCGCGGCGTT ATTTTTGATG
GTGTGGGTAT TGTTTTTTGC CTACCAAGAT GTGGATTATG ACCATTCGCT CTGGTTAACC
TTCTCGCAGG ATAGCCATGT GTCCCGTGCG TTACGGGGCG GTGCGATAGC TCTCGCGATT
CTGCTCGGCT TTGCCATTCG CTATGTGCTT GCGGTGCGAA AACCCCATAC CAGTCGCCTA
GATAGCTCAG CCTTGAGCTG CGCCATGGAG ATTGTTGCCA ATGCGCCGAG TAGCCACGGT
TATCTTGCCT TAGTACAAGA TAAATCGCTG TTATTTAATG AAGATAAAGA TGCCTTCTTA
ATGTATGCCC GCGCCGGACA TTGTTGGGTG GTGATGGGCG ATCCTATCGG TAATCCAGAT
AAATTTGATG ATCTCCTGTG GCAGTTTCGC GAGCTGTGTG ACGCCTACGA TGGTTGGCCA
GTGTTTTATC AAGTGACGCA AAAGTATTTA CCCCACTTTT TAGAGCAAGG GTTGAGCCTG
TATAAACTCG GCGAAGAGGC CATAGTGTCC TTAGCGGAAT TTGAGTTGCA GTCGAGTAAG
TATCGCAGTT TGCGGCAGAG CCATGCCAAG GCATTAAGGG AAGGCTTGAG CTTTAAAGTT
GTCGATGCCA GTGAAGTGCA GAGTCTATTG CCAACATTAG AGGCTATTTC AACCAGTTGG
CTTAAAGCCA AACAGGGGCG AGAGAAGGGA TTTTCGGTTG GTTATTTCTC CGCCGCTTAC
CTGTGCGCTA CGCCAATGGC CTTAGTGTAT TTGAATGGCG AGCTGGTGGC TTTTTCCAAT
GTGTGGGCCA GTGGCGCCAA AATGGAGTTC TCCGTTGATT TGATGCGTTA TCTGCCGAAT
TTATCGGGCA GCAACATAAT GGACTTCTTG TTTACTGAGC TATTGCTTTG GGGCAAACAG
CAAGGATATC AGCAGTTTAA TCTTGGCATG GCGCCCATGT CTGGATTAAC CGATAGAGCC
TTGGTACCGT TTTGGACCAA GCTTGCCAAA ACGGTTTATA AGAAGGGGAA TAAATTTTAC
AACTTTCAGG GGCTTAGAAG GTATAAGGAT AAGTTTAATC CAAGATGGGA AGCTAAGTAT
TTGATTTGTT ATGGCGGGCT ATCTTTACCC GTAGTGGTGG GTAGTTTGGT GACCTTAACG
AGTCGTGGTG CAACTGGCGT ATTTAAAAAG TAG
|
|---|
| Protein sequence | MGRRIRVIIS LLIFTVSLLL LYNLEQDYQL NDILAEVKLF SFSQLALAVA LTVTSYLMLT
LYDYLAIKQL GSSLSYQKVA PVSFLAFTFS NTIGFSLLTG TSIRYKFYSE LGLTGNQITQ
IVLACSVTFF LGFFFICGIA LINFPAQQLA DLPLPTWLFS LSRVFGVLML LGVVGYFLFS
LLRKKPIYFR GFEFAPPVLS QSLKQFVVST LDWLVVGTLF YSLLPAVDGL SYLQVLSIFF
VANAIGVLAH VPGGIGVFES VVTVTLSQYL PVEQILGSVI VYRVIYYIVP FMLALIYFVA
GLVLNNKDKL SKINIDLHIV RQLLPPLLSI SVFSVGLVLL LSVVNPSIVH KYHWLGEIVP
LPIVELSSLI LSASGILLLL LSHGLFKRYK KAFILTQKLL LVAIVFIVLK GAEWQISLAL
GLIYLLMLPC EQVFYRQGSI VGVKYSFGWL LSLAAALFLM VWVLFFAYQD VDYDHSLWLT
FSQDSHVSRA LRGGAIALAI LLGFAIRYVL AVRKPHTSRL DSSALSCAME IVANAPSSHG
YLALVQDKSL LFNEDKDAFL MYARAGHCWV VMGDPIGNPD KFDDLLWQFR ELCDAYDGWP
VFYQVTQKYL PHFLEQGLSL YKLGEEAIVS LAEFELQSSK YRSLRQSHAK ALREGLSFKV
VDASEVQSLL PTLEAISTSW LKAKQGREKG FSVGYFSAAY LCATPMALVY LNGELVAFSN
VWASGAKMEF SVDLMRYLPN LSGSNIMDFL FTELLLWGKQ QGYQQFNLGM APMSGLTDRA
LVPFWTKLAK TVYKKGNKFY NFQGLRRYKD KFNPRWEAKY LICYGGLSLP VVVGSLVTLT
SRGATGVFKK
|
|---|
| |