Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1487 |
Symbol | |
ID | 4478124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1732244 |
End bp | 1733413 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639726057 |
Product | porin |
Protein accession | YP_869127 |
Protein GI | 117919935 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.911374 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA AATTGCTAGC AGTGATGATC CCTGCGGTGC TGTTGTCTGG TACAACGCAA GCGGTCGAGC TGTATAACGA TCAAACCAAT AGCGTCAATA TGATGGGCTG GCTAGGCTTT GCGGCGTTAA ACGATGGCCA CGAAACTTCA GTAATTGATA ACTTTTCCCG CGTGGGATTT CGTTTCGACC GCCAAGAGAA AAATGGTTGG CGCTCCTTTG CCCATACCGA ATGGGGCATT AACATGGTCA CCAGTGACGA TGGCCTGATC TATACCCAAG GTCAAGGTGG TGGTCAGTTA TCGGCTTCAA AAACCTCAGA TTTCCTCTTT AACCGTTTAG GTTATGTCGG CATGTCGCAC GACAAATGGG GCTCGCTCAC CTTTGGTAAG CAGTGGGGGG CTTATTATGA TGTGGCTTAC ACCACTGACG TGCTCAATGC CTTTACCGGC TGGTCTGTCG GTGCTTATAC CTTTGGCGAT GGCGGCCTCA CTGGCGCGGG GCGTGCCGAT GCAGCGCTGC AATACCGTAA TACCTTTGGC AATCTGCATA TCGCGGTGCA ATACGCCTCT AAGCAAAATA GCGATGTGGC GCTCTATGAC AATTTAGGAA ACGCCTTAAA CGATGGGTCT GAGCTGAGCT TCGATCCTAG CTATGGTGCG AGTGCTACTT ACTATTTCAC CGACAAATTT AAGGTGTTAG CGGGCTTTAA CCGCGGTGAC TTCACCGGCA ATCTTGCGGG TAAAGACGTC GATAATACCA ATCAAATCAT CGGTATCGGC GCCCAATACG GCAGCTTCTA CCAATATGCG CCGGGTCGTG ATGCCGACGG CCTGTATGTC GGTTTTAACG CCCATAAGAG TGAGCAAAAC GAGTTAGTGG GTGGCGATCT CTACGACTCA ACTGGCGCCG AATTTATTGT TGCCTATCAC TACGATAACG GATTCGTACC TAGCTTATTG CTGACTTACC AAGATTTGGA CACCGATGAA AACACCGTCA TCCAAGGTAA ATGGACCCGC CAATTTGCCG TGTTAGGCCT GCATTATCGT TATAGCCGCG ACACTATTAT GTATGCTGAA GCCAAAATCG ATTTCAGCGA TATGGACGAT AAAGCCTACG AAGATCTGCA GGATAACAAC TATGCCGTTG GTATTCGTTA TTTCTTCTAA
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Protein sequence | MKKKLLAVMI PAVLLSGTTQ AVELYNDQTN SVNMMGWLGF AALNDGHETS VIDNFSRVGF RFDRQEKNGW RSFAHTEWGI NMVTSDDGLI YTQGQGGGQL SASKTSDFLF NRLGYVGMSH DKWGSLTFGK QWGAYYDVAY TTDVLNAFTG WSVGAYTFGD GGLTGAGRAD AALQYRNTFG NLHIAVQYAS KQNSDVALYD NLGNALNDGS ELSFDPSYGA SATYYFTDKF KVLAGFNRGD FTGNLAGKDV DNTNQIIGIG AQYGSFYQYA PGRDADGLYV GFNAHKSEQN ELVGGDLYDS TGAEFIVAYH YDNGFVPSLL LTYQDLDTDE NTVIQGKWTR QFAVLGLHYR YSRDTIMYAE AKIDFSDMDD KAYEDLQDNN YAVGIRYFF
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