Gene Shewana3_1338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_1338 
Symbol 
ID4478852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1550400 
End bp1551833 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content46% 
IMG OID639725893 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_868978 
Protein GI117919786 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0526886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.316977 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCAAA CAGATCAACG AATTTTACTT GTCGGAACCC CATCAGAGCG CTTAAGTCGC 
CTGTGTTGCA TTTTTGAATT TTTGGGTGAG CAGATTGAAA TCGTCGCCAT CGAAAAGTTA
AGTCTTTGTC TGCAAGATAC CCGGTTCCGC GCTTTAGTGG TCACTGCTGA TAACATGCCA
GCTGATGCTC TCAAGTCACT TGCGAGTCAG TACCCATGGC AACCCATTTT GTTATTTGGC
AATGTAGATG ATCTGCAAGT GTCGAATGTA CTGGGTCACA TTGAAGAGCC ATTAAACTAC
CCACAACTAA CCGAACTCCT GCATTTTTGT CAGGTTTATG GGCAAGTCAA ACGTCCACAA
GTCCCAACCA GTGCAAATCA AACCAAACTG TTTCGTAGCT TAGTGGGTCG TAGTGAAGGC
ATTGCCAATG TGCGTCACTT GATTAGCCAA GTCGCCACCT CTGATGCCAC TGTATTAGTC
CTGGGTCAGT CGGGGACGGG TAAGGAAGTG GTTGCTCGGA ACATTCATTA TTTATCTGAG
CGCCGAGATG GTCCTTTTAT TCCGGTTAAC TGTGGCGCGA TTCCGCCTGA GTTATTGGAG
AGTGAATTAT TTGGCCATGA AAAGGGCTCT TTTACTGGGG CAATTAGTTC TCGTAAGGGC
CGTTTCGAAC TTGCCGAAGG TGGCACGCTG TTCCTCGATG AAATTGGCGA TATGCCTTTG
CAAATGCAGG TAAAATTGCT GCGCGTGTTG CAAGAACGTG TCTTTGAGCG TGTTGGGGGA
ACTAAAACGA TTAATGCTGA TGTACGTGTC GTAGCGGCAA CCCATAGGGA TCTTGAAACT
ATGATCAGCA GCAATGAGTT CCGTGAAGAT CTTTATTACC GCCTTAACGT CTTCCCGATC
GAAATGCCAG CATTAAGTGA GCGTAAGGAT GATGTTCCTT TACTGCTGCA AGAGTTAGTG
AGTCGTGTCT ATAACGAGGG ACGTGGCAAA GTTCGTTTTA CTCAGCGTGC TATTGAATCG
TTAAAAGAAC ATGCTTGGTC AGGTAACGTT CGAGAATTAT CTAACTTAGT TGAGCGCCTC
ACAATCTTGT ATCCAGGTGG CTTAGTTGAT GTTAACGATC TGCCTGTTAA ATATCGCCAC
ATTGATGTGC CAGAATACTG TGTTGAAATG AGTGAAGAGC AACAGGAGCG TGATGCGCTC
GCTTCGATTT TCACCAGCGA AGAGCCAGTT GAAATTCCTG AAACGCGTTT CCCCAGTGAG
TTACCACCTG AAGGCGTTAA CCTCAAGGAT CTGCTGGCAG AGCTTGAAAT CGATATGATT
CGCCAGGCGT TAGAGCTGCA GGATAACGTC GTTGCGCGTG CTGCAGAAAT GCTCGGTATT
CGCCGTACTA CCTTGGTTGA GAAAATGCGT AAGTACGGAA TGACGAAAGA ATAG
 
Protein sequence
MMQTDQRILL VGTPSERLSR LCCIFEFLGE QIEIVAIEKL SLCLQDTRFR ALVVTADNMP 
ADALKSLASQ YPWQPILLFG NVDDLQVSNV LGHIEEPLNY PQLTELLHFC QVYGQVKRPQ
VPTSANQTKL FRSLVGRSEG IANVRHLISQ VATSDATVLV LGQSGTGKEV VARNIHYLSE
RRDGPFIPVN CGAIPPELLE SELFGHEKGS FTGAISSRKG RFELAEGGTL FLDEIGDMPL
QMQVKLLRVL QERVFERVGG TKTINADVRV VAATHRDLET MISSNEFRED LYYRLNVFPI
EMPALSERKD DVPLLLQELV SRVYNEGRGK VRFTQRAIES LKEHAWSGNV RELSNLVERL
TILYPGGLVD VNDLPVKYRH IDVPEYCVEM SEEQQERDAL ASIFTSEEPV EIPETRFPSE
LPPEGVNLKD LLAELEIDMI RQALELQDNV VARAAEMLGI RRTTLVEKMR KYGMTKE