| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1200 |
|---|
| Symbol | |
|---|
| ID | 4479883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1406415 |
|---|
| End bp | 1406978 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639725755 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_868841 |
|---|
| Protein GI | 117919649 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1678] Putative transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0314769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.527879 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGTT TGCAGAACCA TTTTTTAATC GCCATGCCGT CGCTCGATGA CACTTTTTTT
GAACGCACCG TCATCTATCT ATGCGAACAC GATGAAAAAG GCGCCATGGG GCTCGTGATT
AATAAACCAT TGGGCATTGA AGTGAACTCA TTGCTCGAAC AGATGGATTT GCCCGCTGAG
CAAGTGTCGA CCGACCTCGC ATTAGGCGCG CAGGTTTTAA TGGGCGGCCC CGTGTCCCAA
GATAGAGGCT TTGTCTTGCA TACATCCCAG CCCTATTGGG CCAACAGTAC AGAATTAAGC
TCTGGCCTCA TGCTCACCAC CTCAAGGGAT GTATTAACGG CGATTGGCAG CGAGCGCTCG
CCAGAAAAAT TTATCGTGGC ATTAGGTTAT GCGGGTTGGA GCAAAAACCA GCTGGAGCAA
GAACTGGCCG ATAACTCATG GCTGACTATC CCTGCCGATC AGGCCCTACT CTTCGATGTC
AAACACGAGG ATAGATGGCA ACAAGCGAGC CGCGCGCTCG GCTTTGATGC TTGGCAATTG
TCATCACAGG CGGGCCACGC CTAG
|
|---|
| Protein sequence | MESLQNHFLI AMPSLDDTFF ERTVIYLCEH DEKGAMGLVI NKPLGIEVNS LLEQMDLPAE
QVSTDLALGA QVLMGGPVSQ DRGFVLHTSQ PYWANSTELS SGLMLTTSRD VLTAIGSERS
PEKFIVALGY AGWSKNQLEQ ELADNSWLTI PADQALLFDV KHEDRWQQAS RALGFDAWQL
SSQAGHA
|
|---|
| |