| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1196 |
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| Symbol | |
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| ID | 4478713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1403024 |
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| End bp | 1404136 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725751 |
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| Product | twitching motility protein |
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| Protein accession | YP_868837 |
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| Protein GI | 117919645 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0761458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.595068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTCC GTCCGTTTTT AAAAGTCATG GTGGAGCGTA AAGCCTCGGA CTTGTTTATT
ACCGCAGGTT TTCCGCCAAG CGCCAAAATC GATGGCGAGT TACGCCCATT AGCCGAGAGT
GCCTTCACGC CCGCGCAGTC TTTGGATTTT GTCGAATCTG TAATGACTGA GGCGCAAAAG
AAGGAGTTTC ACAGCACTCG CGAGTGTAAC TTTGCTTTTG CGGTTAAGGA TTTAGGGCGT
TTCCGCGTCA GCGCATTCTG GCAGCGTGAA TCTCCGGGAT GCGTTATGCG CCGGATTGAG
ACCAAGATCC CTGAGGTAGA GGACTTAAAA CTGCCACCGA TTTTAAAAGA TCTGGTGATG
AGTAAACGGG GTCTTATCAT CATGGTCGGG GGGACGGGAA CCGGTAAGTC GACCTCCTTG
GCGGCGTTAG TGGGTTATCG TAACGCCCAT GCCCGTGGTC ATATCCTCAC CATCGAAGAC
CCAGTGGAAT TTGTGCACGA TCATCGCAAA AGTATCATCA CTCAACGCGA AGTGGGTATA
GATACAGAAT CCTTTGATGC GGCGTTGAAG AGTTCGCTGC GTCAGGCGCC CGATGTGATT
TTGATTGGTG AGATCCGTAC TCAAGAAACC ATGGAGTTTG CGCTCTCCTT CGCCGAAACG
GGTCACCTCT GTATGGCGAC ATTGCACGCA AACAACGCTA ACCAAGCGTT AGACCGGATC
ATGCACTTAG TGCCTGAGAG TAAACACCAG CAGTTGCTAT TCGACTTGTC ACTCAACCTG
CGCGGCATTG TGGCGCAGCA ACTGGTGCCT AAGGTTGATG GTACAGGACG ACGGGCAGCG
ATTGAAGTCT TGATCAATAC GCCACGTGTC GCGAGCTTGA TTGCTAAAAA CGAGCTGCAT
TTGCTTAAAG AAACTATGGC TAAATCGAAT GAGCAGGGGA TGCAGACCTT CGACCAAGCC
TTGCTGCAAC TCTATATCGA TGGGGAAATC AGCTATGCCG ATGCGCTTCA CCATGCTGAC
TCGCCAAACG ACTTACGTTT AATGATCAAA TTGCAAAATA AAGAGCCTAC CAGTTCAAGC
TTTATGGAAG GCGTGACCTT GGATATGGAT TAA
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| Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESVMTEAQK
KEFHSTRECN FAFAVKDLGR FRVSAFWQRE SPGCVMRRIE TKIPEVEDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNAH ARGHILTIED PVEFVHDHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH
LLKETMAKSN EQGMQTFDQA LLQLYIDGEI SYADALHHAD SPNDLRLMIK LQNKEPTSSS
FMEGVTLDMD
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