| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1120 |
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| Symbol | |
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| ID | 4476455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1318767 |
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| End bp | 1319894 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639725663 |
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| Product | tRNA pseudouridine synthase D, TruD |
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| Protein accession | YP_868761 |
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| Protein GI | 117919569 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC TACATTACCT GTACGGCAAA CCGACGGCCA CCGCCGATTT AAGAACCGTT
AACAGCGACT TTATCGTGAA AGAGATTTTG CCTTTTAGCC CGTCGGGCGA GGGCGAGCAT
CATTTAGTCC ACATTCGTAA GGATGGGCTG AATACGGTGC AAGTGGCTGA AATGCTGGCC
AAGTTCGCTA AGGTTCATCC CAAAGAAGTG ACCTATGCCG GACAAAAAGA TAAAAATGCC
ATCACAGAAC AGTGGTTTGG CATTCGTATC CCAGGTAAAG AAACCCCGGC GTGGAGCGAG
CTTAACAGCG AGCGCTTAAC CATTTTATCC AGCAGTCGCC ATAGCAAAAA ACTGCGTATT
GGCGCGCTCT TGGGCAACCG TTTTATTCTT ACCCTGCGTA ATGTCACAAA CGTGGAAGAC
ATTATCAGCC GCATCGAAAA AGTCAGCCAA ATTGGTGTGC CTAACTATTT TGGTGAGCAG
CGTTTCGGCC ACGATGGTAA AAACCTGGTG ATGGGTCGGC AAATGCTGGC GGGCAAAAAG
GTGAAAGACC GTAATAAGCG CAGCATGTAC CTGTCTGCGG TGCGCTCCAA TCTGTTCAAT
ACCGTTGTCT CCTATCGTTT GGCGAATCAT GGCACTAAAC CCTTAGCGGG GGATTGCGTG
ATGCTGGCGG GCAGTAAGAG CTTTTTCGTC ACGCCAGAAT GGGACTTAGT GGTATTGAAA
CGCTTGATTG AGAAGGATAT TCAGCTTTCT GCGCCACTTT GGGGCCGCGG AAAAATGTTG
CCGCAGGGCG AAGCCGCCGA GGTTGAAACC CTCGCCATGG CAGAGCTGAG CGAAGATTGC
TACGGCCTTG AGCACGCGGG GCTTGAGCAG GAGCGCCGTC CATTGCTGCT TGAACCTCAA
GGCCTTAAAT ACGAGCAAAC CGAGGATGGA TTAGTGCTCG AATTTATCTT ACCTGCGGGC
AGCTTTGCGA CATCGCTGTT ACGAGAGCTG GTTGATTATC AAGATGTGAA AGAGCTGCAA
TGGCAAGCGA CAGTCACGCC TGATGCAAAC GCAGCTGAAA CAAACACAGC ATCAGAAACC
GATTCAGCAG AGGCCATTAC AACCGATAAG GGCGAGTCAG CTTTATGA
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| Protein sequence | MSELHYLYGK PTATADLRTV NSDFIVKEIL PFSPSGEGEH HLVHIRKDGL NTVQVAEMLA
KFAKVHPKEV TYAGQKDKNA ITEQWFGIRI PGKETPAWSE LNSERLTILS SSRHSKKLRI
GALLGNRFIL TLRNVTNVED IISRIEKVSQ IGVPNYFGEQ RFGHDGKNLV MGRQMLAGKK
VKDRNKRSMY LSAVRSNLFN TVVSYRLANH GTKPLAGDCV MLAGSKSFFV TPEWDLVVLK
RLIEKDIQLS APLWGRGKML PQGEAAEVET LAMAELSEDC YGLEHAGLEQ ERRPLLLEPQ
GLKYEQTEDG LVLEFILPAG SFATSLLREL VDYQDVKELQ WQATVTPDAN AAETNTASET
DSAEAITTDK GESAL
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