Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1087 |
Symbol | |
ID | 4476422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1278278 |
End bp | 1281949 |
Gene Length | 3672 bp |
Protein Length | 1223 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639725630 |
Product | undecaprenol kinase., rRNA (guanine-N(1)-)-methyltransferase |
Protein accession | YP_868728 |
Protein GI | 117919536 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.485932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCGT TTTTATTTAA ATGCCAGCCA CATAATCGGT TGGTATTCTC TATTGCTCGT GCTTCTTCAC TGATATCCCT TAACTCTCGA CCACAAAACG TTCGCCATAC GTTAACGTCC GTCATTTCCC TTATTCTGTC GAGTGTAATT GTGAGTGCGG CCAGCTTATT TATGGCGCCG ACTCACGCCG ATGATACTGA GCTTTATGTT TTCGAGGCAT CGGCCCGTAA TGGCTCGCGT CCTCAGGTAC TGATTATTTT CGATAACTCG GGCAGCATGA GCAGTCTCGC CTATGATGTC GAGGCGCCCT ACGAGAATAA GCGCGCAGTA AATTATGCCC AATCGGGTAA TTTATTCTAT AGCCGAGGCT CATCGGAAAA CGCGGCAGCG CCCAACCCTA ATTCACGGAG GGAAAAACGT AAGTTCAAAG GGGCGCTCAA TGGCTGCGAA AGTTCATGGG AATATCTCAA TCGTTACGGC ACCTTTACGG GGTTTTTTAG GGAGTATGGT TTTTCGGGAA GCTCGGGGTC TTGGAGAGAG TTTTCAGAGC TTAACGGCAG TTCCATTTCC GCTGTCGATT GTTTTGAGGA TATTCAGGAA AACAAGTTCG GTAACGCGGT AGGCGAAGCT GAAGGTTTAC CCGTGGATAG CCTAGGGACG GCAAGCAAAC CGGTTCGTTA CACAAAGGCC AGTACTAGCT CGTCAGACAG CGCAAAGTCT GCGGCTAAGG CCAAGGCCGA AAAAACCGCG TTTGGTACTG GTAAAGTGGT TACCGTCTAT ACCGAAGATT ACTTAAACTG GCTGCATGGC CCGAAAACTA AGGTCAATAA AACACGACTG GCCTTGGCTA AAGATGCGAT TGAAAGTGTG ATTCTAACCA CGCCGGGTGT GGATTTTGGC CTAGCGATTT TTAATATGAA TGGCCCCTAT GATGGCCAGC GTGATGGTGG ACGGATTATC TCTGGGATTA AGCCCATGTC CGCTGCAGCT AAAATTGATT TGCTCAAAGG GATCAATGAT ATTAACTACG CTCAAAATAC CCCCTTATGC GAAACCCTCT ATGAGGCGTA CCGCTATTTT GGCGGGCAGA GTCAGTATTT TGGTGACGAC GATAGCGATT ACCATTATTA CGATCAGTGG GGGCGCTATC AAGGGACTTA CCAAGCGAAA AGAAACCCTT TTACTGATCC CGAAGCATTA GTCGTGGGGA CCAATAACTA TAACTCGCCT TTCAAACGTT GCCAAAACGA AGCCTATATC ATCTATATCA CCGACGGTGA ACCCACCTTG GATAACGCGG CCGATGGTTT GGTTGAACAG TTAACTAAAG GTGTGGGAAA ACATACCTCA AGTCCTGTCA GTTACCTTAG TGCGCTTTCG GGCTGGATGA GAAATGAAGA CGTCAATCCT AATTCTGCGG GTAAACAAAC CGTTAGAACC TTTACCATCG GCTTTAGTGA AGGTGCCGCC AGTGCCGAAC ATTTACTGAA GCAGACCGCC GAAAATGGCG GAGGTAAGTA TTTCGATGCG ACCGATGCCA GTAAATTACG CTCTTCATTA CAAACGGCCC TGAACAATAT CCTCGAAAAA AATGCCAGCT TTACCTCTCC CTCGGTGGCA AGTAATAACT TTAACCGAAC ACAAACCTTT GATTCCGCTT ATTACTCTAT GTTTTTGCCG AACAAAGGGC CGAGATGGTT AGGCAATATC AAGAAATTTA AGGTGACCAG TAGTGGTGAT GTTGTCGATA GCAAAGGCAA CAATGCGATA GGTGAAGATG GCAACATCAA AGCCGAGGCC TGCTCCTATT GGACCTCGGC CGAAGAGTGT GGTGCGAGTG GCGATGGTAA CGATGTGAAG CGGGGTGGAG TGCTAGGTGC AATGCAGCAG GCGAGTAGTC GCACCTTGTA CAGTAATTTA GGCACGGGAT TAAGCCCATT TACCCTGTCG AATGCCTCTC GCAAAGCGGG GGGCGATGCC CGTTTGGCCT TGTATATGGG GGTCGATGAA ACTGAGCTTA GCGAGCATTT TGATTGGGCC AAGGGCATCG ATGTCGATAA TGACAAGAAT CAGGACCTCA GTGCCGCGAG TGGCGCAACC CCCAATTGGC GCGCCGATAT TATGGGGGAT GCTTTACATT CCAAACCCTT AGCACTCAAT TTTGGCTCTG AAGACCAGCC CGATATTCGG ATTATCGTGG GGACTAACCA TGGGTTCCTG CATATGTTCA AGGATGAAGG CGATAGCGTG TCTGAGACTT GGGGTTTTAT CCCCTATGAG TTGCTGCCGA ATTTTCGCGA TCTGAAGGCG AACGCGCCAA CGGGCGTGCA CTCGGTATAC GGCATCGATG GCTCGCCAGT CGCTTACACC AAAATGCAGG GCAAACGTAT TGAAAAAGCG TGGGTGTTTG TGGGGATGCG CCGTGGGGGA AATGCTTATT ATGCCCTCGA TATCACCTCC CCCGATAATC CTACTTTTAT GTGGAGGATT GATGCTAGTT CTCCGGGAAT GGGCGAATTA GGTCAATCCT GGTCGACGCC TGTCGTCACC ACGATTCCGA GTGCCACAGG CGATAAACCT GTGCTGATCT TCGGTGCGGG ATATACCCCC GCGACCAAGG ATGGCGCCGA GATTGGCAGT GACGATAGCC AAGGTCGAGG CGTGTTTATT GTCGACGCCG AAACGGGGGC ATTAATTCAT CAATTTGGTG GCAATGGCGC CAACACCCTA TTGCCGGGGA TTGCCAACAG TATTCCGAGC AGCGTTGCCG TGTTAGATGG TAATGGCGAT GGCCGAACGG ATAGGATCTA TGCCACAGAC ACACAAGGGA ATGTGTGGCG AATGGACATG CCTTCGGCAA ATACTTCGAC TTGGTCGGGA TTTAAATTTG CCGCATTAGG GGACAGGAGT TCGGTGGCTG GGGATCGGCG ATTTTTCTCG GGGCCGGCGG TTGCGCAGAC CATGGTCACC AATACCTTCG AGTTGACTCA GGTGGTGAAT GGGAAATCGA CCAAGACAGT GACTAAGCAG AATATTCCCT ACGATGCCGT AGTTGTAGGC AGCGGTCACA GGGCGAAGCC TAGCGATGCG TCCCGTTCGG ATATGTTTTT TGCCTTGCAA GATAGGAACA TAGTGACTCA ATCATTCCAA GGTAAACCTA ATCAAAAGCC AGTGCCGAGC GCCTTAACCT TAAGTGACTT ATACGATGTA ACTACGGCGG CGCCAAATGA TAAAGCCAGC GAAATCGCTT TTGGTCAAAA GCGGGGCTGG TACTATAACT TCTCCCGCAA AGGTGAAAAG AGTCTATCTT CTGCGACCAT AGTTCAGGGC GAGGTGTATT TCACTAGTTT TGTGCCAGGC AGTGATGCTT CGGTGAACCA ATGTTTGAGT TCGGGTAAGG GCTACCTCTA TAAAAAGAAC TTACACAAGG GCACAAATGG CTATAGAACC GATTTCTTGT ATGCCGGTGA ACTGGTTTTG GATACGCCGC AATTGGTTAT CCCCCCGGCT GCGCAGCCCG ATGCCCCCAA TGCTAAGGCT CCCACTCCAG ATATGTTTTT GATTGGGATT GGTAAGGCGG TGCCCGAGGA GGCGACTTGT GAGAGTGGTA ATCCTAAGTG TATCGGCAGT GGTCCCAAGG CAAACAAGAT TTACTACTAC GTAGATCAAT GA
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Protein sequence | MIPFLFKCQP HNRLVFSIAR ASSLISLNSR PQNVRHTLTS VISLILSSVI VSAASLFMAP THADDTELYV FEASARNGSR PQVLIIFDNS GSMSSLAYDV EAPYENKRAV NYAQSGNLFY SRGSSENAAA PNPNSRREKR KFKGALNGCE SSWEYLNRYG TFTGFFREYG FSGSSGSWRE FSELNGSSIS AVDCFEDIQE NKFGNAVGEA EGLPVDSLGT ASKPVRYTKA STSSSDSAKS AAKAKAEKTA FGTGKVVTVY TEDYLNWLHG PKTKVNKTRL ALAKDAIESV ILTTPGVDFG LAIFNMNGPY DGQRDGGRII SGIKPMSAAA KIDLLKGIND INYAQNTPLC ETLYEAYRYF GGQSQYFGDD DSDYHYYDQW GRYQGTYQAK RNPFTDPEAL VVGTNNYNSP FKRCQNEAYI IYITDGEPTL DNAADGLVEQ LTKGVGKHTS SPVSYLSALS GWMRNEDVNP NSAGKQTVRT FTIGFSEGAA SAEHLLKQTA ENGGGKYFDA TDASKLRSSL QTALNNILEK NASFTSPSVA SNNFNRTQTF DSAYYSMFLP NKGPRWLGNI KKFKVTSSGD VVDSKGNNAI GEDGNIKAEA CSYWTSAEEC GASGDGNDVK RGGVLGAMQQ ASSRTLYSNL GTGLSPFTLS NASRKAGGDA RLALYMGVDE TELSEHFDWA KGIDVDNDKN QDLSAASGAT PNWRADIMGD ALHSKPLALN FGSEDQPDIR IIVGTNHGFL HMFKDEGDSV SETWGFIPYE LLPNFRDLKA NAPTGVHSVY GIDGSPVAYT KMQGKRIEKA WVFVGMRRGG NAYYALDITS PDNPTFMWRI DASSPGMGEL GQSWSTPVVT TIPSATGDKP VLIFGAGYTP ATKDGAEIGS DDSQGRGVFI VDAETGALIH QFGGNGANTL LPGIANSIPS SVAVLDGNGD GRTDRIYATD TQGNVWRMDM PSANTSTWSG FKFAALGDRS SVAGDRRFFS GPAVAQTMVT NTFELTQVVN GKSTKTVTKQ NIPYDAVVVG SGHRAKPSDA SRSDMFFALQ DRNIVTQSFQ GKPNQKPVPS ALTLSDLYDV TTAAPNDKAS EIAFGQKRGW YYNFSRKGEK SLSSATIVQG EVYFTSFVPG SDASVNQCLS SGKGYLYKKN LHKGTNGYRT DFLYAGELVL DTPQLVIPPA AQPDAPNAKA PTPDMFLIGI GKAVPEEATC ESGNPKCIGS GPKANKIYYY VDQ
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