Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1037 |
Symbol | prfC |
ID | 4479382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1212358 |
End bp | 1213938 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639725580 |
Product | peptide chain release factor 3 |
Protein accession | YP_868678 |
Protein GI | 117919486 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00294724 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000176372 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGTCAGACA ATAAAGTAGA GGTCGATAAA CGTCGCACCT TCGCGATTAT ATCGCACCCC GACGCGGGTA AAACCACCAT TACCGAAAAA GTGCTGTTAT TCGGAAACGC GCTGCAGAAA GCGGGTACCG TTAAGGGCAA AAAATCGGGT CAGCATGCTA AGTCTGACTG GATGGAAATG GAAAAAGACC GTGGTATTTC GATTACTACG TCTGTCATGC AGTTCCCCTA TGGTGGCGCG CTCGTTAACC TACTCGATAC TCCCGGCCAC GAAGACTTCT CAGAAGATAC TTACCGCACC TTGACGGCGG TTGACTCTTG CTTGATGGTT ATCGACTCGG CAAAAGGGGT AGAGGATCGT ACCATCAAAT TGATGGAAGT CACGCGTCTG CGCGATACGC CTATCGTCAC CTTTATGAAC AAACTCGACC GTGATATTCG CGATCCCATC GAACTGATGG ATGAGGTTGA AGATGTTCTT AATATCGCCT GTGCGCCTAT CACTTGGCCT ATTGGCAGCG GTAAAGAGTT CAAAGGTGTT TACCATATTC TGCGTGATGA AGTGGTACTG TATCAGAGCG GTATGGGACA CACGATTCAA GAGCGCCGCG TGATTGAAGG CATCGATAAC CCTGAGCTGG ATAAGGCGAT TGGTAGTTAT GCTGCCGATT TACGTGATGA AATGGAGTTG GTTCGCGGTG CATCGAATGA ATTTGATCAT CAAGCCTTCT TAAAGGGTGA ACTTACGCCA GTCTTCTTCG GTACTGCATT GGGTAACTTC GGTGTTGACC ATATCCTCGA TGGTATTGTG GAGTGGGCGC CAAAGCCGTT GCCTCGTGAA AGCGATGCGC GGATGATCAT GCCTGACGAA GAAAAATTCA CCGGTTTTGT GTTTAAAATC CAAGCTAACA TGGATCCTAA ACACCGTGAC CGCGTTGCCT TTATGCGCGT TTGCTCGGGT CGCTATGAGC AAGGCATGAA GATGCACCAT GTGCGCATTG GCAAAGATGT TAACGTCAGT GATGCCTTGA CCTTTATGGC GGGTGACCGA GAACGTGCTG AAGTGGCGTA TCCTGGTGAT ATTATTGGTT TACATAACCA TGGGACCATT CGTATTGGTG ATACTTTCAC CCAAGGTGAA AAGTTCCGCT TTACCGGTGT ACCTAACTTC GCACCTGAAA TGTTCCGCCG TATTCGTCTG CGTGATCCAC TCAAGCAAAA ACAATTGCTT AAGGGCCTAG TTCAGTTGTC TGAAGAAGGT GCTGTGCAGG TATTCCGTCC ATTAGATTCG AACGATTTGA TCGTTGGGGC TGTGGGTGTG CTGCAGTTTG AAGTGGTTGT CGGCCGCTTA AAGAGCGAGT ACAACGTTGA AGCGATTTAC GAAGGTATTA GCGTTTCAAC GGCACGCTGG GTTTATTGTA AAGATGAGCG TAAGCTAGAA GAGTTCCGCC GTAAGTGCAG CCAAAACTTG GCGCTCGATG GTGGCGATAA CTTAACTTAT ATTGCGCCAA CTATGGTTAA CTTAAATCTT TCGATGGAAA GATACCCTGA TATCGAGTTC GCTAAAACGC GCGAACACTA A
|
Protein sequence | MSDNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM EKDRGISITT SVMQFPYGGA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEDR TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI ELMDEVEDVL NIACAPITWP IGSGKEFKGV YHILRDEVVL YQSGMGHTIQ ERRVIEGIDN PELDKAIGSY AADLRDEMEL VRGASNEFDH QAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPKPLPRE SDARMIMPDE EKFTGFVFKI QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR ERAEVAYPGD IIGLHNHGTI RIGDTFTQGE KFRFTGVPNF APEMFRRIRL RDPLKQKQLL KGLVQLSEEG AVQVFRPLDS NDLIVGAVGV LQFEVVVGRL KSEYNVEAIY EGISVSTARW VYCKDERKLE EFRRKCSQNL ALDGGDNLTY IAPTMVNLNL SMERYPDIEF AKTREH
|
| |