Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0829 |
Symbol | |
ID | 4477040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 958991 |
End bp | 960724 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639725365 |
Product | spermidine synthase |
Protein accession | YP_868473 |
Protein GI | 117919281 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGAAT CCCAAACAAC CAGCTCGGCG ACTCAAGCGG TACAAACGAG TCGCCTAAGC TGGTTCGATG ATGTCCTACT ATTGGGCATT ATGGCCGTGC TCGCTGGGTG CGGCCTGATC TACGAATACC TGTTGTCCCA CTACGCAGGC CGGATCTTAG GCGCGTTAGA AGCCGCCATT TACACTATGA TCGGCCTGAT GATCGTCTCC ATGGGTCTTG GCGCCTTTGC CGCACGCAAA ATTAAAGATG CCTTTACTGG CTTTGTGGTG CTGGAACTCA CGGTCGCGCT CTGTGGCTCG CTGGCGATTT TAATTACCGC TGCCGTGATA GGTTTTGGTC AGCAGCTGCC GATGCTTATC GCCTCCACCT TAGGTTTACC ACCGGATCAA CTGCCCGAAG GTGGCATGAT TGGCTCGCTG CAAAAGCTGA GCGAACATCT GCCCTATGTC TGGGGCGTGC TGCTCGGCTT GATGATCGGG ATGGAAATTC CGCTGATCGC GAGGGTGAGA CAATCCCTAT CAGATGAACA CTTACTGCAT AATGCCGGTA CCATTTATGG CGCCGACTAT ATTGGTGCAG GCATTGGCGC GGCCATTTGG GTCGGCTTTA TGCTGGCCAT CGATATTCAA CTCGCCGCAG CTCTGACCGC CAGCTTTAAC TTGCTCGCCG GCTTTGTGTT TATCTGGCGT TTTTGGCCCA AAATCCAAAG AGCAAAATTA TTGCTCGCGG GGCATTTTGT GGTCACGGGC GTATTATTAT TGCTCGCCAT TCAAGGGCCG AGTTGGGAGC AACAGTTCAA CAATCTACTT TATAAAGACA AAGTGGTTTA CGCTAAGGCC ACGCGTTTTC AACAACTTAC CTTTACCGAG CGCTTACGCG GCAATGGCCT CTCCCCCATA TACTCTTTGT ATATCAATGG CCGATTACAG TTTTCGAGTA TCGATGAGCA TATCTACCAT GCGTTTTTAG TTCACCCAAC GCTTGCGGCC AGCGCTCGCC ACAACAAGGT ATTAATCATT GGTGGTGGTG ATGGACTGGG CCTAAAGCAA GTGCTGCGTT GGGAACCTGA GCAAGTGACC TTGCTCGATC TTGATGCCGC ATTGGTGCAA CTCTTTAAAA CGCCCGATAC GGATATGCCT AAACGCCTAA GCCAAGCCCT GTTAGCCCTT AATGGCAATG CCTTTAACGA TCCTCGCGTT AAGGTGATTA ACGACGATGC CTTTAATGGA GTCGATAAAT TGATTGCCGC AGGAGATAAA TACGACGCCA TTATTGTGGA CTTGCCCGAT CCTAGCCATC CCGATTTAAA TAAGCTCTAT TCGGATTATT TCTATCGCAA GCTCAAGGAA CTAATGAGCA ATGATGGCGC TCTGACTGTA CAGTCAACCT CACCCTATCA CGCGCAAAAG GCCTTTATCT CGGTAGCCAA AACCTTGGCC TTAGCGGGGT TTGACGTAAA ACAGTATCAC CATAACGTCC CAAGCTTTGG AGAATGGGGC TGGAGTATTG CCACCCTATC TGGAAAGGAT GCCCAGCATC GCCTTGGCGA GCTGACCACA CTACCGATAG CGGATGACTG GTTAACCTTA GGTTTAGTCA AAGGTGCCTT TGAATTTCCT GCCAATTTTT ATCAGGACGC CGCCAGTATT AAGCCTAACG AACTCGGTTC GTTACAGTTG TACCATTATC ATCAACAGGC ATGGTCCGAA ACCCAAGGAC TGGATCTTTT TTAA
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Protein sequence | MHESQTTSSA TQAVQTSRLS WFDDVLLLGI MAVLAGCGLI YEYLLSHYAG RILGALEAAI YTMIGLMIVS MGLGAFAARK IKDAFTGFVV LELTVALCGS LAILITAAVI GFGQQLPMLI ASTLGLPPDQ LPEGGMIGSL QKLSEHLPYV WGVLLGLMIG MEIPLIARVR QSLSDEHLLH NAGTIYGADY IGAGIGAAIW VGFMLAIDIQ LAAALTASFN LLAGFVFIWR FWPKIQRAKL LLAGHFVVTG VLLLLAIQGP SWEQQFNNLL YKDKVVYAKA TRFQQLTFTE RLRGNGLSPI YSLYINGRLQ FSSIDEHIYH AFLVHPTLAA SARHNKVLII GGGDGLGLKQ VLRWEPEQVT LLDLDAALVQ LFKTPDTDMP KRLSQALLAL NGNAFNDPRV KVINDDAFNG VDKLIAAGDK YDAIIVDLPD PSHPDLNKLY SDYFYRKLKE LMSNDGALTV QSTSPYHAQK AFISVAKTLA LAGFDVKQYH HNVPSFGEWG WSIATLSGKD AQHRLGELTT LPIADDWLTL GLVKGAFEFP ANFYQDAASI KPNELGSLQL YHYHQQAWSE TQGLDLF
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