Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0799 |
Symbol | |
ID | 4477010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 921925 |
End bp | 922602 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639725335 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_868443 |
Protein GI | 117919251 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.603428 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGATT TTATTTACCA ACCACCAACA ACTCCCTGGC TCGATGTGCT TTACCAAGAT AAAGACATTA TCGTCGTCAA CAAGCCTTCG GGGTTGTTAT CAGTGCCTGG TCGCGATCCC GCCCATTACG ACAGTGTGTA CGCCCGAGTA AAAGCTGAGC ATCCGCATTG CCAAATCGTC CATCGCCTTG ATATGGCGAC CTCAGGTGTA ATAGTGGTTG CGCTCATTCG TAGCGCCGAA CGCGAATTAA AACGCCAGTT TCATGATAGA GAAACCAGCA AAACCTATCT CGCCAGAGTT GCTGGACACG TTAAAAATAC AACGGGTAGC GTGGATTATC CGCTGATCTG CGACTGGCCC AATCGCCCAA AACAGAAGGT TGACCACGAA ATAGGTAAAC CCTCATTAAC CCACTTTGAA GTGCTAAGCC GTGCCAAACG CTCGACGCTG GTAAAGCTTA AGCCTATTAC AGGGCGCTCA CACCAACTCA GGGTACATAT GATGGCGCTG GGGCATCCGA TCCTCGGCGA CGGCTTTTAT GCCGATCCTT TAGCAAAATC CTTAGCACCG CGATTATTAC TCCACGCCGC AGAGCTCACC ATCAAACACC CGTACACGGG TGAGAGCATG ACGTTCAGTG CCAATGCTTC CTTTTGTGAG CCAGAAGGTG AGCAATGA
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Protein sequence | MTDFIYQPPT TPWLDVLYQD KDIIVVNKPS GLLSVPGRDP AHYDSVYARV KAEHPHCQIV HRLDMATSGV IVVALIRSAE RELKRQFHDR ETSKTYLARV AGHVKNTTGS VDYPLICDWP NRPKQKVDHE IGKPSLTHFE VLSRAKRSTL VKLKPITGRS HQLRVHMMAL GHPILGDGFY ADPLAKSLAP RLLLHAAELT IKHPYTGESM TFSANASFCE PEGEQ
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