Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0725 |
Symbol | tolC |
ID | 4476935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 841529 |
End bp | 842836 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639725260 |
Product | outer membrane channel protein |
Protein accession | YP_868369 |
Protein GI | 117919177 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000245313 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000963429 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG GTTCAAGCAG ATGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTAGTA TTACAAGCAC AAGCTCAGCG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA CTGTTACCGA CCATCAGCGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAGC GATACCAGTG GATTGACCGG TAGCCTAAAA CTGAACCAAG TGATCTATGA TCACAGCGCT TGGGTTGGTT TAAGCCTTGC CGAAAAAGCC GCTTCTCAAG CCGATTCGAC CTATGCATCA GCACTGCAAA ATTTGATCAC TCGTGTGACT AAAGCCTACT TCGATGTATT AACGGCAAAA GATAACTACG AGTTCCAAGG CGCAGAAAAA CGTGCGATTG AGCGTCAACT CGAGCAGACA AAACAACGTT TTGCCGTAGG TTTAACTGCG ATTACCGACG TACATGAAGC GCAAGCTCAG TATGACTTAG CCTCGGCGAC TGAAATTTTG GCTGAAAACA CACTAGCCAA CAGCTACGAA GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ATGTGCTCGA CACCAACCGT TTCTCTGCGG TAACGCCAGC ACCTACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC AATAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCTCAAGA GACCATTAGC CTCTACAAAG CGGGCCATAT GCCATCTCTT AGCCTAAACG CTGGCTATAA CAAAGGGTTA GAGCAAAAAA CGGGCGACGT AAATGAGCCA GATTTTGACA ATGTGAACGT TGGTGTGAAC TTAAGCATTC CTATTTTCGA AGGCTTTAAA GTCACGTCAC AGGTCAAAGA AGCACAATTC CAATATGTGG AAGCGAGCGA GAAGTTAGAG CAAACCTACC GTAGTGTGGT GAAAAACGTT CGTAACAACT ACAACAACGT AGGCGCTTCA ATCAGCTCTA TCCGTGCCTA TGAGCAGTCA GTGATTTCAT CTGAAAGTGC GTTAAAGGCA ACACAAGCGG GTTTTGAAGT CGGTACTCGT ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG GATGCTCGTT ACAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC AGGCACCTTA AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
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Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP LLPTISANVG YDKAWNDPKS DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSTYAS ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL NEDDVISINN GLKAE
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