Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0689 |
Symbol | |
ID | 4476899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 804742 |
End bp | 805824 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639725224 |
Product | DegS serine peptidase |
Protein accession | YP_868333 |
Protein GI | 117919141 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0549825 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000493421 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAATAA AAGAAACCCT GTTATATCTC GGTAAAGCCG TGCTCTTCGG CCTTATCATG GCGGCCATGT TTTTGTTAGT TACACACTAC TTCGACAATA AGAATCTCGG CAGCTCGTTA CTGCAAAACC GGGGTAATAA CACGGTCGAA CTCTCCTTTG CTAAGGCCGT ACGCCGCGCC GCTCCTGCCG TAGTCAATAT TTATAGCTTA AGTATTGATC AGAACCGTCC GCTAAACTCT GGCTCCCTCC AAGGCCTAGG CTCAGGGGTG ATCATGAGCA AAGAAGGCTA TATTCTCACG AATTATCATG TGATTAAAAA AGCTGATGAA ATTGTGGTCG CCCTGCAGGA TGGCCGCAAA TTCACCTCGG AAGTCGTCGG TTTTGATCCA GAAACCGATC TTTCAGTGCT TAAGATCGAA GGCGATAATC TTCCTACGGT GCCAGTCAAT CTCGACAGCC CACCGCAGGT TGGGGATGTG GTATTAGCGA TTGGTAACCC TTATAACCTC GGCCAAACCA TTACCCAAGG CATTATCAGC GCCACGGGTC GTAACGGCTT AAGTTCTGGT TATTTAGACT TCTTACAGAC AGATGCTGCA ATTAACGCCG GTAACTCAGG CGGCGCCTTA ATCGACACTA ACGGTAGCCT GATTGGTATC AACACCGCCG CCTTCCAAGT GGGCGGTGAA GGTGGCGGCC ACGGGATTAA CTTCGCGATC CCGATTAAAC TGGCCCACAG CATTATGGGT AAACTGATTA AAAATGGTCG AGTGATCCGT GGTGCCTTAG GGATATCTGG CGAACCGATT AACCCTGTTG TGGCGCAAAT CCTCAACCTA CCCGATTTAC GTGGGGTATT AGTCACAGGC GTCGATCCTA ATGGCCCTGC GGCACGGGCG CATCTACAAC CAAGGGATGT GATCATCAAA TACGATGGCG AAGATGTGCC AGGGGTCGAA ATGCTGATGG ATAGAATTGC CGAAACTACG CCCGGCAAGA AAATCATGAT GACGGTTATC CGCCAAGGCA AAGAGCAAGT ATTGCCGGTG ATTATCGATG AAAAGGTCGT CGTCGATAAT TAA
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Protein sequence | MTIKETLLYL GKAVLFGLIM AAMFLLVTHY FDNKNLGSSL LQNRGNNTVE LSFAKAVRRA APAVVNIYSL SIDQNRPLNS GSLQGLGSGV IMSKEGYILT NYHVIKKADE IVVALQDGRK FTSEVVGFDP ETDLSVLKIE GDNLPTVPVN LDSPPQVGDV VLAIGNPYNL GQTITQGIIS ATGRNGLSSG YLDFLQTDAA INAGNSGGAL IDTNGSLIGI NTAAFQVGGE GGGHGINFAI PIKLAHSIMG KLIKNGRVIR GALGISGEPI NPVVAQILNL PDLRGVLVTG VDPNGPAARA HLQPRDVIIK YDGEDVPGVE MLMDRIAETT PGKKIMMTVI RQGKEQVLPV IIDEKVVVDN
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