Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0672 |
Symbol | |
ID | 4476882 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 791964 |
End bp | 793439 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639725207 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_868316 |
Protein GI | 117919124 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.151414 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0700122 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAACTTCAA CAGGCCATTC GTCTGTTGCA ACTGTCGTCA TTGGAACTGC AGCAAGAGAT CCAGCAAGCC TTAGACTCTA ATCCTCTTCT TGAGCTGGAA GAGGAGCAAT TCGACGCGCC TACCGAACGT AAGCAAGATA TCGCCGATAC CGACTTTAGC GAAACGACAG CTCAGCCACA GGAACAAGAT AATTCCACCG TGGACATTGC CGAGTCGTTG ACCAAAGAAT CCCTGCCCGA AGAACTACCC ATGGACACCA CTTGGGATGA AGTCTTTACC GCATCGCCAA ACTCAGGTTC TGGCGCCAGC CGTGAAGATG ACATGCCCTT CCAAGGGGAA ACCAGTGAAG GCCTGTACGA ACATTTAGAA TGGCAGAAAA ACCTCACGCC CTTCTCTGAA ACCGATTTAG CTATTGCCAC CGCGATTATT GATGCCATCG ACGATCAAGG TTATCTGACT CAAAGTACTG AAGATATCCT CGAGGCCATG GGCAATCCTG AGATCGAGCT GGATGAAGTC GAAGCCGTAC TCAAGCGCAT TCAACACTTC GATCCCGTCG GTGTCGCCGC AAGGGATTTA AGCGAATGTC TGCTTATCCA ACTCTCTCAC TTTGCGCTGG ATACCCCACA CCTCGAAAAC GCCCGCATGT TGATCAAAGA CCATTTAGAT CTGATCGCCG CCCGCGACTT TAGATTGTTG ATGCGTAAGA CCAAACTCAA AGAGGACGAG TTAAGGGAAA GCATAGCGCT GATCCAAACC TTAAATCCTC GCCCCGGTTT GCTCATCACT CCTGTTGATG AAGAATATGT CATCCCCGAT GTATCAGTGT CGAAGAAAAA TGGTCGCTGG GTGGTCGAGT TAAATCCAGA CTGCATGCCA AAAATCAATG TTAATCAGCA ATATGCAGCC ATGGCGCGCA GTACCAAAAG CCAAGCCGAT AGCCAATTTA TCCGCGGGCA CCTGCAAGAA GCCAAGTGGT TTATCAAAAG CCTTGAAAGC CGTAACGAAA CACTGCTCAA GGTGGCAAAC TGCATAGTGC AATATCAACA GGGCTTCTTC GAATACGGTG AAGAAGCCAT GAAACCTATG GTCCTAAACG ATATCGCCGA GGCGGTAGAG ATGCATGAGT CCACCATTTC ACGGGTGACC ACACAAAAAT ACATGCATAC CCCAAAGGGA CTTTTTGAAC TAAAATATTT CTTCTCAAGC CACGTCGGGA CTGATGATGG CGGTGAGTGC TCATCCACGG CAATCAGAGC CTTCATTAAG AAACTGGTTG CAGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGCAAGAT GGCGCAACTT CTGGCAGAAC AGGGAATTAA CGTTGCGCGC AGAACCATTG CGAAGTACCG AGAGGCGATG CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPTER KQDIADTDFS ETTAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FALDTPHLEN ARMLIKDHLD LIAARDFRLL MRKTKLKEDE LRESIALIQT LNPRPGLLIT PVDEEYVIPD VSVSKKNGRW VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM LIPPSNQRKS L
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