| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0647 |
|---|
| Symbol | |
|---|
| ID | 4476857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 763691 |
|---|
| End bp | 764680 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639725182 |
|---|
| Product | NERD domain-containing protein |
|---|
| Protein accession | YP_868291 |
|---|
| Protein GI | 117919099 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.016807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000125306 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTAA AAACTAAAAC ACTGCAAAAT ACCCAAACAC CACAAACTAT TGCGGGTCAA
AAACAAGAAC AGGATGTTGC CTTTTATCTG CGCCGCGCTT TCAAAGATCA TCCAGAAGTA
CTCGTTATCA ATGATTTTCG ATTCACCTTT AACGGCGAAA CAGCTCAAAT TGATCACTTA
ATTATTTATC CATACGGCTT TGTTTTAATT GAGTCTAAAA GCATAAAAGG TCATGTGGAT
GTAAACCAAC ATGGCGAATG GACTCGCAGT CACGGCAATA ACTGGTTTGG TATGCCATCA
CCAATTAAGC AAGTTGAACT GCAACAATCG CTGCTTAAAG AGATGCTAAA ACAGCATCGA
AGTGAAATTC TCGGTAAGTT ACTCGGGATA AAACAGCAAG GTTTCGGTAT GCGTTGCTGG
GATCATTTAT GCGCGGTCTC AAGCGATGCC GTGATCAATA GAGAAACGAT GCCTGCGGCA
GTTTCAGAGC AGTTAGTTAA GACAGAGTTT TTAGTCGAGA AGCTTGAAAA GATCATGAAT
CTTAAAAGCA AATTCTTCCG AATTATTAAT GTGAGTGATA CCCGTCCAGA CTTTAATCAA
GAAGAACTGA ATTCAATCGC TAAGTTCTTA ATCGATCGCC ATCTAGACCC ATCTCAAGCT
ACGAGTGAAA TAACGTCCGT ACAAACACCA CAAGTCAAAG AACCTGTTGC CTCCTTTGCC
GTTAACAAAG TGGCGGAAGC GAAAAACCCT GCAATAGCAC AACCCACAAC TAACAGCATC
CTTCGCTGCA AACATTGTGG CGAATCAACA AACTACACCC CGATGTACGG TAAGTTTGGT
TACTACATAA AATGCAATCA ATGCACCAAA AACACGCCAA TGAAACAAGC ATGCCCAGAG
TGCCAAAGCA GACAAACAAG AGTAATCAAG GCAAAAGATA GCTATACACT ACGGTGCCAA
GATTGCAGTC ATAGCTCAGA AGTGATTTAA
|
|---|
| Protein sequence | MILKTKTLQN TQTPQTIAGQ KQEQDVAFYL RRAFKDHPEV LVINDFRFTF NGETAQIDHL
IIYPYGFVLI ESKSIKGHVD VNQHGEWTRS HGNNWFGMPS PIKQVELQQS LLKEMLKQHR
SEILGKLLGI KQQGFGMRCW DHLCAVSSDA VINRETMPAA VSEQLVKTEF LVEKLEKIMN
LKSKFFRIIN VSDTRPDFNQ EELNSIAKFL IDRHLDPSQA TSEITSVQTP QVKEPVASFA
VNKVAEAKNP AIAQPTTNSI LRCKHCGEST NYTPMYGKFG YYIKCNQCTK NTPMKQACPE
CQSRQTRVIK AKDSYTLRCQ DCSHSSEVI
|
|---|
| |