| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0429 |
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| Symbol | |
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| ID | 4479336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 491659 |
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| End bp | 496122 |
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| Gene Length | 4464 bp |
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| Protein Length | 1487 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639724965 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_868078 |
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| Protein GI | 117918886 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.89086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA TAATAATCCA CTTCATTTTG CCCTCCATGT TGCTTGTTTG CTTGAGTCTC
CAGTCGGCTT GGGCGGGTAG TTTTGTGCAA CGGGTTTTTA CTGATAGAGA TGGACTAGAA
GCCACGAGCA TTCGTGCGCT CACACTTGAT GACCATGGTT TTGTGTGGGC AGCAACCGAG
CAAGGTTTGT ATCGGGTTAG TAATTCTAAA GTGAGACGGA TTGATAAAAC TGGGTCTGAA
TTAAGGCTTG CGGATGAGTT TTTAACAACC GTTATCAATG TCGATCGCGA TATGCTTTTA
CTGAGCACAA ATGCCGCGAC TTACCTTTAC GATATTGCAA AAAATCAGTT TATCCAGATG
GGGTCAGCTA ATTTATTTCC ACATTTCCCC GGTGGTGTTT TACTTTCTGC AGCGCGTAAG
AATACCCAAG AATGGCGATT ATTGATTGAT AATGGTCAGA TTTACGATTT TTCCCCTTCA
AAACTTACTC TGACTTTAGT CAACCAATTG CCTGTGAATC GCGATTTACC ATGGCGAAAA
TTATTGAGTT TGCCTGATGG TCAGTTTCTT GTTGCGGGTC AATTTCAATT GCTACTTCTC
AACGGTGCGG GGGAAAAAGT CGTTGATTAC CAATGGACTG AACCTATGGG AAGTATTCTG
GATATGCTTG AGGATTCAAA ACAGCGTATT TGGATTGCAA CGAGTCGAGG GGTTTATCGA
TTAGAACCAA AAACCTTACA GATTTTTCCT GTTCCAGAAT TACCCGATTG GAGTACCGCT
ATGGTTGAGG GCCATAATGG TGAAATTTGG TTTTCAAGTC GAGCGGGGTT ACTCAAGTGG
TCTCCCGATA CCCACCAGAT TGAAAATTAT CAACAAGAGC TTAAGACGCA AGCCAATATG
GAAACATTGA AGGCCATCTT ATTTGATAAT GCTGGCTTAA TGTGGGTGGG CGGCTCTGGT
GATGGCTTGG CATTGCTGGC TTCGCAGCCG GATTTTATTC TCGATACCTA CACAAGCGAA
CCCCCCTATG GGCTACCCGA TCCTATGGTG TGGTCTGTGT TTGCAAGTGA TGAAGGGTTA
TGGTTTGGTG CTTCAAATCT TAGTTTTGTG GGGAAAAATA ACCAGAAAGC GGTGACCGTT
GAGATAGACG GGTTGAAAGC CCATGAGAGT ATTTATGGGA TCAGTCAGTT TATCGAGCAT
TATTTATTAG TTTCGACCAC CAGTGGGTTA TTTGTTGTCG ATAAATTAAC CCTAAAAGGA
ATGAGTTTTT CACAGTGGGC CCATGGGAGT GAAGAGTTTA AAAATAAACT GATCTACAGC
ACTTATGTTG ATCCTAAATT AAAAGGGCGA TTTTGGATCG CGACAGGAAC GGGTCTCTAT
TTTTGGGAGC AAGGGCTGTT TGAGCCACAG CCTTTTAATA TTGATGGATC GACGGGGGAC
TCACCAGAAC CCAAGCGACC TACTATTCGT ACTTTGTATC GAGCTTCCGA TGGCAAGTTA
TGGTTAGGCG GAAGACGAGT GTTTGGTTTT ATTGATGAGC AAAACCTATT CCACGATAAG
AGGGGATTAT TCAGCGGCTT GAGCTCTGAG CCATCGATTA GTCATATTGA AGAAATATCT
CCTGGAGTGA TGTGGTTTGG TTCCTATGAG AGAGGGCTAT TTGAATATCG ACTTAATACT
GCTGAGTTAA TTTCGCTTAC TTCGCAATGG CAAGTTAACT GTAGCTCGGT ATTTTTTATC
CAAAAAACCA CGAATGCCAA TGTGGTTGCC TGTGCAGATT CCCTGATCAG ACAAGATACG
TCAACAGGGC ATATTGCTAT GTTCAATCAA CTCGATGGTT TGATTTCAAA TGAGATGAAT
GAGGGGGCAT ATTTTTATTC AGCGGCTACA GGGCTTTATA TCGGTACCCC TGAAGGGGTA
ATGCACATAG ATGTGGATAA ACTGTCGAAT CGCATAACAG ATGACCATGT GATGTTGGAG
TCAGTGTCTG TTTATTATGA CGATAATACG CAAGTGTCTT TATTGCCTAA GCCTATGATG
GTGATTAAGC CAGGTGCCAA TATGGTCAGT CTGCAAATCA CAAACTTAGA TTATTTAGAC
GACTCACCCA TCCAATTTAA GTATCGGCTG CGATATCAAG GAGAAGAAGA TAACTATGTA
CTGCTGCAAG GCGAGTCGCA GATAAACCTC GCTGGACTGG CGGCAGGCGA GTATGGGCTG
GAGATTTTAA GTCAGGTGAA TGGGATCTGG TCGGATAAAC CCTTCGCTTA TCCCTTCTAT
GTTGAGCAGC ATTGGTGGTT GACTCAAGGC TTTAAGGGCA TCTTGCTACT GATCTTTTCG
ATCATCGCAT TGAGTTTAGC TTGGTATCGT CAGCGTCAAG TACGTACTTT TATGACGATG
AATCAGGCAT TAACTGAGAG CGACGATCGT TTACGCCAAT CGCTTCGTGG TAGCGACTCC
GACCTGTGGG AATGGCATAG AGATACCCAG AGCTTTTACC TCGATAACCG TGGCGCCGTG
CTAGGTAATC ATGCCAATGA GATTGTGGTT ACCCTCGAGA CTCTCCCCGT CCACCCTGAG
GATAGGGATA AAGCTTTAGG TCAGTGGAAC AGTATGTTAG CGGGTGAAAT CGATCGCTTT
GAGGCGGAAT ATCGTTATCA ACGCCGCAGT GGTAATTGGG GCTGGTTAAG AGTGAGGGGC
CGCCCGGTGT CGCGTAATCG CACTACCCAC GAGATTGAAC GGGTAGCGGG GATTTATAGC
GACATTACCC TGCAGCGTCA GCTAGAGGAT GAAATTAATC TTCTCGCCCA AGCCTTTGAG
AACACCTCCG AAGGGGTGTT GATCTTAGAT GTGGATGAAA ATATTCGAGT GGCAAACCAT
GCGGCGCAGC AAATCATTGG TTCTGAGCAG CATGACCTCG TCGGACAATC TTTTTCTCAA
TTCGTGCAAA TGAAGGATGG CCTCTCGACC GAAGTGCATC AGTTACTCGG ACAAGACAGT
TCGTGGACGG GTGAGCGTGA GTTAGTGGGG CAGAATGGGC TGGTTTGCCC CGTGTGGCTT
AACGTCTCTG TGATGCAGTC GGCGAGTGAT AGCTCTGTAC ACTATGTGAT TGTCTTTTCG
GATATTACCG AGCGAAAACG CACCGAGGCG GATCTGAGAC GATTGGCGAA TTATGATGTG
TTAACTGGGC TGCCTAACCG CTCACTGTTT TCGAGCCGGT TATTGCAATC GATTCAGACC
GCGCAGCAGA CTGGTGAAAA GCTGGCGCTT TTATTCCTCG ACCTCGACCG CTTTAAACAT
GTAAACGACT CCTACGGCCA TAGCATGGGT GATGCCTTGC TGGTTGAAGC CTCCAACCGC
TTGCAGTCTT GCATCGGCAG TGAGCATTTG CTGTGTCGTT TTGGCGGCGA TGAGTTTGTG
ATCCTGCTGA GAAATGCCAA TAACTTAAAT GAGATAAACC ATATTGCCGA GCGTTTACTC
GCGCAAATTG TGGCGCCATT TAAATTGTTT GGTCGCGAGT TTTATATCTC CACCAGTATC
GGTATCAGTA TTTGGCCCGA TGATGCGGTG CAGCCCGAAG CCTTTATTAA AAACGCTGAT
CTTGCCATGT ACCACGCCAA GGAAGAGGGG CGTGGCAACT TTAAATATTA TTCGTCGGAG
CGTAATGCCC AAGCCTTATA CCATTTACGC TTGGAAGCGG ATTTGCGTAA GGCCATCGAG
CGGGAAGAGT TTGAGCTCTA TTATCAGCCG CAGATTGATA TTTTACGTGG CGATAAATTT
ATTGGGATGG AAGCCTTAAT TCGTTGGCGC CATCCGAAGG AAGGTTATAT CCGTCCCGAT
ATTTTTATTA AGGTCGCCGA AGCCTGTGGT TTAGTGGTTG AAATTGACCG CTGGGTATTC
CGCCGCGCCT GCTTGGATGG CGCTAAGTGG GTAAAACGTT GTGCGGCCCC CTTTAAATTG
TCGGTGAATA TTTCTGCGGT GCATTTCCGC CAGCCGGATT TTATCGAAGG CTTGAAAAAA
ATCTTAGCCG ATACCCAAAT GCCGACCTCA TCCCTCGGGT TAGAAATCAC CGAAGGCGTG
TTGATGAAGG AAGTGCAAGC GGCAAAAAGC CATCTGACTC AGCTTAAAGA ATTGGGAATT
GAAGTGGCTA TTGACGACTT TGGCACTGGC TATTCTTCCT TGGCTTACCT ACGTCATTTT
GATGTGAATA CCTTGAAGAT TGACCGCTCC TTCTTGATTG ATATCGCGAC TAATTCTGCG
GATCAGGCGA TTGTTAGCAG TATTATCGAG CTGGCTCGCA ACTTGAAATT AACCGTGGTG
GCCGAAGGGG TCGAAACGGT CGAACAGTTG GAACAGGTCT TTAGCCGTGG CTGTTATATA
GTGCAGGGCT ATTATTTTGC TAAGCCTATG TCGGTGACAG AGTTCGAACG ATATTTACTG
CAAAAAACGA CTCTTGGATC TTAA
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| Protein sequence | MKKIIIHFIL PSMLLVCLSL QSAWAGSFVQ RVFTDRDGLE ATSIRALTLD DHGFVWAATE
QGLYRVSNSK VRRIDKTGSE LRLADEFLTT VINVDRDMLL LSTNAATYLY DIAKNQFIQM
GSANLFPHFP GGVLLSAARK NTQEWRLLID NGQIYDFSPS KLTLTLVNQL PVNRDLPWRK
LLSLPDGQFL VAGQFQLLLL NGAGEKVVDY QWTEPMGSIL DMLEDSKQRI WIATSRGVYR
LEPKTLQIFP VPELPDWSTA MVEGHNGEIW FSSRAGLLKW SPDTHQIENY QQELKTQANM
ETLKAILFDN AGLMWVGGSG DGLALLASQP DFILDTYTSE PPYGLPDPMV WSVFASDEGL
WFGASNLSFV GKNNQKAVTV EIDGLKAHES IYGISQFIEH YLLVSTTSGL FVVDKLTLKG
MSFSQWAHGS EEFKNKLIYS TYVDPKLKGR FWIATGTGLY FWEQGLFEPQ PFNIDGSTGD
SPEPKRPTIR TLYRASDGKL WLGGRRVFGF IDEQNLFHDK RGLFSGLSSE PSISHIEEIS
PGVMWFGSYE RGLFEYRLNT AELISLTSQW QVNCSSVFFI QKTTNANVVA CADSLIRQDT
STGHIAMFNQ LDGLISNEMN EGAYFYSAAT GLYIGTPEGV MHIDVDKLSN RITDDHVMLE
SVSVYYDDNT QVSLLPKPMM VIKPGANMVS LQITNLDYLD DSPIQFKYRL RYQGEEDNYV
LLQGESQINL AGLAAGEYGL EILSQVNGIW SDKPFAYPFY VEQHWWLTQG FKGILLLIFS
IIALSLAWYR QRQVRTFMTM NQALTESDDR LRQSLRGSDS DLWEWHRDTQ SFYLDNRGAV
LGNHANEIVV TLETLPVHPE DRDKALGQWN SMLAGEIDRF EAEYRYQRRS GNWGWLRVRG
RPVSRNRTTH EIERVAGIYS DITLQRQLED EINLLAQAFE NTSEGVLILD VDENIRVANH
AAQQIIGSEQ HDLVGQSFSQ FVQMKDGLST EVHQLLGQDS SWTGERELVG QNGLVCPVWL
NVSVMQSASD SSVHYVIVFS DITERKRTEA DLRRLANYDV LTGLPNRSLF SSRLLQSIQT
AQQTGEKLAL LFLDLDRFKH VNDSYGHSMG DALLVEASNR LQSCIGSEHL LCRFGGDEFV
ILLRNANNLN EINHIAERLL AQIVAPFKLF GREFYISTSI GISIWPDDAV QPEAFIKNAD
LAMYHAKEEG RGNFKYYSSE RNAQALYHLR LEADLRKAIE REEFELYYQP QIDILRGDKF
IGMEALIRWR HPKEGYIRPD IFIKVAEACG LVVEIDRWVF RRACLDGAKW VKRCAAPFKL
SVNISAVHFR QPDFIEGLKK ILADTQMPTS SLGLEITEGV LMKEVQAAKS HLTQLKELGI
EVAIDDFGTG YSSLAYLRHF DVNTLKIDRS FLIDIATNSA DQAIVSSIIE LARNLKLTVV
AEGVETVEQL EQVFSRGCYI VQGYYFAKPM SVTEFERYLL QKTTLGS
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