Gene Shewana3_0419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0419 
Symbol 
ID4479326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp476825 
End bp478534 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content47% 
IMG OID639724955 
Producttype IV-A pilus assembly ATPase PilB 
Protein accessionYP_868068 
Protein GI117918876 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02538] type IV-A pilus assembly ATPase PilB 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.447977 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00974258 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCATCCG CTGGCCTTCA CCTGGGATTA TCCACCCTTT TCATCCGTAA AGGTCTGCTT 
AATGAAGAGC AGATGGCGAG TGCCATCACT AAATCCCGCC AAAATAAACA AACCTTAGTC
ACTACCTTAG TGCAGACTAA GCTAGTGTCG GCTCGCAGTA TTGCCGAGCT TTGCTATGAG
GAATACGGCA CCCCGCTGCT GGATTTAGCC GAATTTGATG TTAGTGCCAT TCCCGAAGAG
TTTCTGAATA AAAAACTGAT TGAAAAGCAC CGCTGCTTAC CGCTATTTAA GCGCGGTAAT
CGCCTCTATA TCGCCACCTC TGACCCCACC AATATTGCCG CCCTTGAGGA ATTCCAATTT
AGTGCAGGCC TACATGCCGA AGCGATTTTG GTGGAAGAAG ATAAGCTCGC TAAAGCCCTT
GAAAAGGTAC TAGAAGAAGA TATTACTGGC CTTGATTTAA GCGGCATGGA TGAAGCAGCA
CTTGCCGGTA TCGAAGTTAC CGATACCGAT AAGCGCCAAG AAGAAAACGC AGGAGAAGCC
AGCGATGACG CCCCTATTGT TATTTATATC AATAAGATAT TAACCGATGC CATTCGTAAG
GGCGCCTCTG ACTTACATTT TGAGCCCTAT GAAAAACGCT ACCGTATCCG TTTTCGTATC
GATGGTATTT TGCATGAGGT CTCCGAACCG CCCATTAGTT TAGCAGGGCG ACTCTCGGCG
CGCTTAAAGG TAATGTCCAA GCTGGATATT GCCGAGCGCC GCGTCCCACA AGATGGGCGG
ATTAAAATGA AGCTATCCCG CACTAAGTCT ATCGACTTTC GGGTAAGTAC CCTGCCGACC
CTGTGGGGCG AGAAGATTGT AATGCGGATA TTAGATTCTT CTTCCGCCCA GCTTGGTATC
GAAAAACTCG GTTACGAACC CGATCAAGAA AAGCTTTACC TTGAAATGCT AGCCAAACCT
CAGGGCATGA TATTAGTGAC AGGCCCAACG GGTTCGGGTA AAACCGTTTC GCTCTACACA
GGCTTAAATA TCCTCAATAC CGCCGAGCGT AATATCTCCA CTGCCGAAGA TCCGGTGGAA
ATTAACCTTG AGGGGGTAAA CCAAGTCCAT ATTAATTTAA AAGCGGGTTT AACCTTTGCT
TCAGCACTAC GTTCGTTTTT GCGGCAAGAC CCCGATGTGG TGATGGTCGG GGAAATCCGT
GACCTTGAAA CCGCCGAAAT TGCCATTAAA GCCGCGCAAA CTGGCCACTT AGTATTATCA
ACCCTGCATA CTAACTCGGC GGCAGAAACG CTCACCCGTT TAATTAATAT GGGCGTACCC
GGCTATAATA TTGCCAGCTC AGTTAATTTA ATTATTGCTC AGCGCCTTGC ACGGCGGCTT
TGCACTGAAT GCAAACAAGC CGAACAGATA CCCGAACATG AGCTACAACG CTTAGGCTTT
ACCGATGAGC AAATCGCTCA AGGGTTTACC ACCTTTAAAC CTGTGGGTTG TGAACATTGT
TCTGGTGGCT ATAAAGGACG GGTAGGTATT TACGAAGTGA TGAAGATGTC AGATGAAATT
GCCCGTACTA TTATGGAAGG TGGCAATTCA TTGCAGATAG CAGATCAAGC CAAGGCTCAA
GGCATGCGCG ACCTGCGGCA ATCGGGCCTC CTAAAAGTCC TTCAAGGGGT AACTAGCATT
GCAGAAATCA ATAGGGTGAC AAGCTTTTAA
 
Protein sequence
MPSAGLHLGL STLFIRKGLL NEEQMASAIT KSRQNKQTLV TTLVQTKLVS ARSIAELCYE 
EYGTPLLDLA EFDVSAIPEE FLNKKLIEKH RCLPLFKRGN RLYIATSDPT NIAALEEFQF
SAGLHAEAIL VEEDKLAKAL EKVLEEDITG LDLSGMDEAA LAGIEVTDTD KRQEENAGEA
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PISLAGRLSA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT LWGEKIVMRI LDSSSAQLGI
EKLGYEPDQE KLYLEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTAER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CTECKQAEQI PEHELQRLGF
TDEQIAQGFT TFKPVGCEHC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIADQAKAQ
GMRDLRQSGL LKVLQGVTSI AEINRVTSF