Gene Shewana3_0396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0396 
Symbol 
ID4479303 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp455901 
End bp456404 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content52% 
IMG OID639724932 
Productputative transcriptional regulator 
Protein accessionYP_868045 
Protein GI117918853 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00892545 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.277026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATACC CAACATTCGC ACTCGATGAT ATTGGTTCAC TGCATGAGTC CGCCCAAGTG 
GAGTTCAAAC TCGCGCGGGG CCGCGATGGT CAAGGTCAGC TCCCCGAAGA TATTTGGGCG
ACCTATAGCT CCTTCGCTAA CACCTTAGGT GGCGAGATTA TCCTCGGGGT ACGTGAAGAA
CATGGTCATT TCACCATTGA AGGCATTCCT AATCCCCTGC CCGTGTTGCA GGAGTTTTGG
GAAATCCTCG ATGATCCAAG CCGCACCAGC CATAATATTC TGGCGATTTC CGATGTGCAG
CTGATTGAAA TCATGAATAA AAAGCTGATA AGAATTCGTG TACCACTCGC GCCAGAGCAT
CTTAAGCCCG TGTTTATCGG CACCGATGCT TATACGGGGA CTTATTTTCG CGTGGGGGAT
GCCGACATGC ACGCCAGCCG AAGACAGGTC ACGCAAATGC TGCGCCGCGC CCATCATTGC
ACTAAGCAAC TCAAGGCGCG TTAA
 
Protein sequence
MTYPTFALDD IGSLHESAQV EFKLARGRDG QGQLPEDIWA TYSSFANTLG GEIILGVREE 
HGHFTIEGIP NPLPVLQEFW EILDDPSRTS HNILAISDVQ LIEIMNKKLI RIRVPLAPEH
LKPVFIGTDA YTGTYFRVGD ADMHASRRQV TQMLRRAHHC TKQLKAR