| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0391 |
|---|
| Symbol | dapF |
|---|
| ID | 4478973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 452040 |
|---|
| End bp | 452867 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639724927 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_868040 |
|---|
| Protein GI | 117918848 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.749695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGC
ATAGGTTTCG ACCAACTTTT ACTGGTTGAG CCGCCCTATG ATCCCGATTT GGATTTTCAC
TATCGTATCT TTAATGCCGA CGGTGGTGAG GTCGAAAACT GCGGCAATGG CGCCCGTTGT
TTTGCGCGCT TTGTTCGTAA TAAAGGGCTG ACGAATAAGA ATAAAATTCG CGTGAGCACC
TCTGCGGGTA AGATGACTCT TCGCCTCGAA CGTGACGGTA CTGTCACTGT GAACATGGGC
GTGCCCGTGC TCGACCCAAG CCAAATTCCT TTCAAAGCCA AAAAGGCCGA AAAAACCTAT
CTGTTGCAGA CGCCGCAACA AACCTTTTTA TGTGGCGCGG CCTCTATGGG CAATCCCCAT
TGCGTGCTCG ATGTGGAAGA TGTTGCCAAC GCCAATGTCG CCGAAATTGG CGCGCTGCTC
ACTAAGCATG AGCGCTTCCC GCGCGGAGTA AACGTCGGCT TTATGCAGGT AGTTAACTCG
GGCCATATCA AGCTTAGAGT TTATGAACGT GGTGCGGCCG AGACCTTAGC CTGTGGTACT
GGCGCTTGTG CCGCCGTGGT GGTAGGGCAG ATCCAAGGCA AACTTGACCA ACAGGTACGT
GTCGACTTAC CGGGGGGCAC CTTAACCATC AATTGGGAAG GCGAAGGCAA ACCCCTGTGG
ATGACGGGAC CTGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
|
|---|
| Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG IGFDQLLLVE PPYDPDLDFH
YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG
VPVLDPSQIP FKAKKAEKTY LLQTPQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL
TKHERFPRGV NVGFMQVVNS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR
VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
|
|---|
| |