| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0380 |
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| Symbol | |
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| ID | 4478962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 421769 |
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| End bp | 423151 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 639724916 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_868029 |
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| Protein GI | 117918837 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC ACCTCACGGC AAATGATTTA GATATGGTCG ATGATGTTTA TGGCGCAATT
ATGACTGATG CTCCTAGTGG GCACAGATTA ATTATTTGGG CTTTAGCTGC CATGGTCGCC
TGTTTTTTGT TATGGGCAGG TTTTGCCAAA CTCGATAAGG TGACAACGGG TTCTGGGAAA
GTTATCCCTT CTTCTCAAGT TCAAGTCATT CAAAGTCTCG ACGGCGGTAT CATGCAAGAA
CTCTTTGTGA GAGAAGGGGA TATTGTCACT AAAGGGCAAC CCCTTGTTAG GATTGATGAT
ACACGTTTTC GTTCTGACTT TGCTCAACAG GAGCAAGAGG TTTTAGGTTT AAAAACGAAT
GCAATTCGCA TGCGCGCAGA ATTAGATAGC ATTCTAATCT CTGATATGAC TTCTGACTGG
CGTGAGCAAG TAAAAATAAC CAAAAAAGCT TTGGTATTCC CCGATAGCAT TACAGAAGCA
GAGCCTGCAT TAGTTAGGAG GCAGCAAGAA GAATATAATG GGCGCTTAGA CAATCTGAGC
AACCAACTGG AGATTCTGGT TCGTCAGATA CAACAAAGAC AACAAGAAAT CGATGACCTT
GCCTCAAAAA CTACGACCTT AACAACCAGT ATGCAGTTGA TTTCTAGGGA GTTAGAGCTT
ACGAGGCCTC TGGCTAAAAA AGGGATTGTG CCCGAAGTTG AATTACTTAA ACTCGAACGC
GCAGTGAACG ATGCCCAAGG GGAATTAAAC TCATTGAGAC TGCTTAGACC AAAACTGAAA
GCAGCATTAG ATGAAGCCAT ATTAAAACGC CGTGAGGCGG TGTTTGTTTA TGCCGCAGAC
CTTCGTGCAC AGCTAAACGA AACACAAACT CGATTATCAA GAATGAACGA AGCCCAAGTT
GGTGCCCAGG ATAAGGTAAG CAAAGCGGTG ATTACATCGC CGGTAAATGG CACGATCAAA
ACTGTGCATA TCAATACGTT AGGAGGAGTT GTCCAACCGG GTGTTGATAT TATTGAAATT
GTCCCATCCG AAGATCAACT ATTGATAGAA ACCAAAATCC TTCCTAAGGA TATTGCGTTT
TTACACACAG GTTTACCTGC AGTCGTTAAG GTAACGGCAT ATGATTTTAC TCGTTACGGG
GGTCTTAAAG GTACAGTCGA ACATATTAGT GCCGATACAT CACAGGACGA TGAGGGAAAT
AGCTTCTACC TTATAAAGGT GAGAACCGAA GAATCAAGTT TAATCAAAGA CGATGGCACG
CAGATGCCAA TTATACCGGG GATGTTAACG ACCGTTGATG TCATAACCGG ACAAAGATCC
ATTCTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ACACAGCGCT CAGAGAGCGT
TAA
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| Protein sequence | MSKHLTANDL DMVDDVYGAI MTDAPSGHRL IIWALAAMVA CFLLWAGFAK LDKVTTGSGK
VIPSSQVQVI QSLDGGIMQE LFVREGDIVT KGQPLVRIDD TRFRSDFAQQ EQEVLGLKTN
AIRMRAELDS ILISDMTSDW REQVKITKKA LVFPDSITEA EPALVRRQQE EYNGRLDNLS
NQLEILVRQI QQRQQEIDDL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER
AVNDAQGELN SLRLLRPKLK AALDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV
GAQDKVSKAV ITSPVNGTIK TVHINTLGGV VQPGVDIIEI VPSEDQLLIE TKILPKDIAF
LHTGLPAVVK VTAYDFTRYG GLKGTVEHIS ADTSQDDEGN SFYLIKVRTE ESSLIKDDGT
QMPIIPGMLT TVDVITGQRS ILEYILNPIL RAKDTALRER
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