| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0375 |
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| Symbol | |
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| ID | 4478953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 413613 |
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| End bp | 416243 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639724907 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_868024 |
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| Protein GI | 117918832 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.413916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG ATGAAGATGG AACTACCCCG CCTCGAGCTC ATGAGGTTGA ACGCTTAAAA
AAGAGACTTA ATCGCCTCAA ATATTTGGCG CATAAGTATA AGCGTGCCGA AGTCGTTCAA
AATGCGTTAC TCGAATTATC CCATATTGCG ACTCAGGTTC CTTCCCTCGA AGAATTCTAT
CTAGGTGTGC ATCACCACCT AAAGCAACTG ATCTCTGCCG ATAATTTTTT TATTGCCACT
CTAGATGTGA ATAGCGGGGA CATTTCGGTT CCCTTCTTCG CCGATGAAAA AGACGCCCAC
CCCGCCCAAC TCTATCCCGA GCAATCGCTA TCCATACTGC TACAACAGGG CTTAACGGGC
TATGTCTTTC GCACCGGCGA AACCGTATTG TGCGATGAGG CTAAAGTTGA CGAACTGGTT
CAAGCGGGCG AGATAGTCAA TCTCGGCTCA CCATGTCACC TGTGGCTAGG CGTTCCCATT
AAACATGAAG GCATAGTGAC CGCGGTACTC GTAGTCCAAA CCTATGATAC CAATGTGAGT
TACGGCGATA TCGAGGTCGA GTTAATGACC TTTATTTGCC ATCACATTGC CGGCGTGATG
GAAAGGCTTA AACATCAAGA ACAACTAGAA CAAGCCATTC AGCAACGCAC TAAGGAACTC
AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTGTATGAGC GCCGCAGAGC CGAGCGGTTG
CAAAAGTCGT TATTTGAGAT TGCAGAGCTT GCAAGCTCAG GCTCGGATAA CCCTGACTTC
TATGCCCAGC TGCATAATGT GATTCGCCAT CTTATCCCAG CCAATAACTG TTATATCGCT
CTGCTGAATG AAGAAGGCAC ACACTTAACC TTCCCGTTTT ACGTGTCGCA ATTGGGTAAC
CAACATCCAG GTTCAAGGCC CTTGCAGGAT GGATTGACCG AGTATGTGCT TAAACATAAG
CGCCCATTAT TACTCGACCA AAATGATATC AATGACTTAA TCAGCTCTGG CGAACTTTAC
GCTAAAGCCC CCGCACTAAA CCACACCCAA ACAATGCATC AATGGATAGG TATTCCACTG
TTTATCCATG ATGAAGTGCG TGGCGCCTTG ACCATTTACA GCTTCAGCAT GACCCAAAAC
TACCAAACTA AAGATTTGGA ATTGCTGACT TTTGTGTCCC AGCATATCGG TGCGGCCATC
GAGAAAAAGC TAACAGCAGA ATCTTTGCGC CGCAGCTATG AAGAATTAGA AGAAAAAGTC
GCGGCCCGCA CCACGGCTCT TGCCGAGTTG AATAAGGATC TTGAAAAAGA AATCCGCCAA
CGCCGCAATA TGGAAGCCAA GCTAGTGCAT GATGCCAAGC ACGATGCGCT CACAGGGCTA
CCGAATCGCG CCATGTTTAT GGAGCGACTC AACCAAGCCA TAAAGCACGT ACGGCGCCAT
AGCCTAGAGC AGTTTGCGCT GCTCTTTATC GACCTCGACC GCTTTAAGCA AATTAACGAC
ACTATGGGGC ATTTAGAGGG GGATAGGTTC TTAATTGAAA CCGCTACCCG CCTACGCGCC
TGTATTCGCA GTAACGATAC CTTAGCCAGA CTTGGTGGCG ATGAGTTTGT TATCCTGCTC
GATAGCATTA ATGGTATTAA CGATGCCCGT GATGTTGCCG AGCGAGTAAT TCAAAAAATC
TCACTCTCCT ATACCTTAGG GGCAATCGAG TTTCATTCGG GCGCCAGTAT AGGCATCACC
ATCAGTGGCA ATAAGCTAGA TACCAGTGAA TCCATGCTAC GTAATGCCGA CACTGCCATG
TACCAAGCCA AGGCGAATGG CAAAGGCTGT TATGTTATCT TCGACGATAG CGCCTCCCAG
CAAAAGATGC AGGACATTGC CTTCGAAAAT GATTTTAAGC AGGCATTGCA AACCGGTGAG
TTACAACTGC AGTTTTGGCC GATTGTCGAT TTACAGACAC AGCAAACCCA AGCTTTAGAA
TGCCGTTTGA CTTGGGAACA TCCACAGTGG GGCACCATTC CACAGGAGAT CCTCAGCCAG
TTAGCCGAAC AAGCGAACCT GATGGTCGAA CTGGATAAGT ATACGATTAG CTTGCTGGAT
AAGAGTTATC ATCAACTACT TGCCAACCAA GGGGATAAAG TTGAATTACA CCTTATGCTG
TCGAGCCAAC ATCTAAAGCA TAAGCACGCG CTACGTGGAC TCAAAAACGC CCTAAAGCAG
ACTAAGCTTG CACTGCCACA GCTATGGCTG TTTTTTAATG AAAAGGCATT AGTGCTGGAA
ACAGAGAATC ACATTAATGG CTTTGAGTTG TTGAAAAAGC TGGACGTGAA CTTGGGGATC
AGCCACTACG GCAGTGGCCA CAGCTCATTA AATAGCTTGT TATTCTTACC CATTAAGGGC
TTAAAGCTCG ATGCCAACAT CACCAAACAA TTGCAGGATG AGCAACACAT TAAGCTGATG
TCGGCTTACC AGAAAGCGGC TTCGACCTTA GACTTACAAA CCTTTGTCGA CGGGCTACAA
TCCGCCGAGC AGATAAAAAT CTTCCACGCA TTAGGTTATC GCTTTGGCCA AGGCGGTGCC
TTAGCCTCAC CTTTTTTATT GTCAGACACC ACACAACAGG TCTGTGCCTG A
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| Protein sequence | MFRDEDGTTP PRAHEVERLK KRLNRLKYLA HKYKRAEVVQ NALLELSHIA TQVPSLEEFY
LGVHHHLKQL ISADNFFIAT LDVNSGDISV PFFADEKDAH PAQLYPEQSL SILLQQGLTG
YVFRTGETVL CDEAKVDELV QAGEIVNLGS PCHLWLGVPI KHEGIVTAVL VVQTYDTNVS
YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL
QKSLFEIAEL ASSGSDNPDF YAQLHNVIRH LIPANNCYIA LLNEEGTHLT FPFYVSQLGN
QHPGSRPLQD GLTEYVLKHK RPLLLDQNDI NDLISSGELY AKAPALNHTQ TMHQWIGIPL
FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLTAESLR RSYEELEEKV
AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH
SLEQFALLFI DLDRFKQIND TMGHLEGDRF LIETATRLRA CIRSNDTLAR LGGDEFVILL
DSINGINDAR DVAERVIQKI SLSYTLGAIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM
YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFKQALQTGE LQLQFWPIVD LQTQQTQALE
CRLTWEHPQW GTIPQEILSQ LAEQANLMVE LDKYTISLLD KSYHQLLANQ GDKVELHLML
SSQHLKHKHA LRGLKNALKQ TKLALPQLWL FFNEKALVLE TENHINGFEL LKKLDVNLGI
SHYGSGHSSL NSLLFLPIKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL DLQTFVDGLQ
SAEQIKIFHA LGYRFGQGGA LASPFLLSDT TQQVCA
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