| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0047 |
|---|
| Symbol | |
|---|
| ID | 4478923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 56630 |
|---|
| End bp | 57085 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639724567 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_867698 |
|---|
| Protein GI | 117918506 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000883142 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAA CACGCTATAC CGACTTTGGT GTTCGCACGC TGATGTATCT GGCGGTTCAG
CCCGATAGAA AAACCCTTTT TAGGATCGCA GAGATTACAG AGGTATTTGA TTTGTCGCCA
AATCATGTCT CGAAGATTGT GCATCATTTA GGCAAATTAG GTTATCTGGA AACCATACGC
GGTAAAATGG GCGGATTTCG TTTAGGGAAA CCGGCGAGCG AGATTAATCT AGGGCAGCTG
ATCCGTGCGT TAGAGAACTC TCTGGCACCG ATTGATTGCA GCAAACCCTA TTGCCGTTTT
ACTCCCGCCT GCCAGTTGAA GGGCGTGTTA GCTCAAGCCG TTGAGGCGTA TTTAAACGTA
CTAGATCAAT ACAGCCTGCA GGACATTGTC AGTAATCGAA ATGAGCTGTT GGCACTGCTG
CCAGACATGA CTATTTCTGT CTTACAGTTG GATTAG
|
|---|
| Protein sequence | MQLTRYTDFG VRTLMYLAVQ PDRKTLFRIA EITEVFDLSP NHVSKIVHHL GKLGYLETIR
GKMGGFRLGK PASEINLGQL IRALENSLAP IDCSKPYCRF TPACQLKGVL AQAVEAYLNV
LDQYSLQDIV SNRNELLALL PDMTISVLQL D
|
|---|
| |