| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0039 |
|---|
| Symbol | |
|---|
| ID | 4478911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 45802 |
|---|
| End bp | 46365 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639724555 |
|---|
| Product | DNA topoisomerase type IA Zn finger domain-containing protein |
|---|
| Protein accession | YP_867690 |
|---|
| Protein GI | 117918498 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.125507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000514659 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGA TCGATGAACA ACTATTTAGT GCCCATGAGC ACGCGCTGGA AAAAGAATTC
GAGCTATGCC CAGAGTGTGG CAGCGAGTTG TCGGTAAAAC ATAGCAAACA TGGGAGTTTT
ATTGGTTGTA ACAACTATCC TACCTGCCAA TATACCCGTC CCTTAGTGCA GCATGAATCG
ATTGAAACCC AAGTGATTGA AGGCTCCAAG TGTCCCGAGT GCGGCCATGA GTTAGCGGTC
AAATCGGGGC GTTTCGGTAT CTTTATCGGT TGCACTCAAT ATCCCAGTTG TACCCATATA
GAAAGGCCAG ATCAGGAGAA CGATAAACCT GAGGTGGCAT GTCCCGAATG CAAAACTGGC
AAGCTTGAGC ATCGTACCAG CCGTTTTGGT AAGAGTTTTT ATGCTTGCAG TGCGTATCCC
AAATGTAAAT TCATCGTGAA TTATCCTCCC GTTGCCGAAA CTTGCCCGAG TTGTGGCTTT
GGTATTTTAG TCGAGCGCAA AGGGGCCGCG GGGATGCGTT TAGAATGTCC GCAAAAAAGC
TGTAAATACA AACGCGCGCT TTAG
|
|---|
| Protein sequence | MSKIDEQLFS AHEHALEKEF ELCPECGSEL SVKHSKHGSF IGCNNYPTCQ YTRPLVQHES
IETQVIEGSK CPECGHELAV KSGRFGIFIG CTQYPSCTHI ERPDQENDKP EVACPECKTG
KLEHRTSRFG KSFYACSAYP KCKFIVNYPP VAETCPSCGF GILVERKGAA GMRLECPQKS
CKYKRAL
|
|---|
| |