| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0030 |
|---|
| Symbol | |
|---|
| ID | 4479448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 36603 |
|---|
| End bp | 37157 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639724546 |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_867681 |
|---|
| Protein GI | 117918489 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4635] Flavodoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000025966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000099426 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA TTCTGGTGCT TTATTTTACC CGTGGTGGCC ATACGGCCAA GATAGCGAAT
GCGATTGCGC AGCAACTCAC GCTGCGTGGC GCCAAGGTGG ACTTGGTGGA TATCAATAGT
GCGGCGGCAA CCAAGATTAA CTGGCCCGAT TATCAACTGG TAGCGCTAGG GGCTTGTGTA
CTCTATGGTA CCTACGATAA GAGTGTATTT CAGTTTATAG AGCAACACGC TCCGGCCTTA
AGTGCGTTGC CAAACAGTTT CTTCTGCGTC AACGTGGTGG CGCGTAACCC TGAGAAACGC
ATCCCTGAGA ACAATAAATA CCTGCAAAAA TTCATTGCGT TATCACCTTG GACTCCCACC
GATTTGAAGA TTATCGCCGG AAAGGTGGAT TACCCCTCGT GGCCCTGGTA CGACAGACTG
ATGATCCAAT TGATTATGAA AATCACTAAA GGACCAACGG ATCCTAAGGC GGTGATCGAT
TATACCGACT GGGAAGATGT GAAGGTCTAT GCCGACCATC TGCTAACCTT GGTCGAGGTT
ACTGAACCCG CCTAA
|
|---|
| Protein sequence | MTRILVLYFT RGGHTAKIAN AIAQQLTLRG AKVDLVDINS AAATKINWPD YQLVALGACV
LYGTYDKSVF QFIEQHAPAL SALPNSFFCV NVVARNPEKR IPENNKYLQK FIALSPWTPT
DLKIIAGKVD YPSWPWYDRL MIQLIMKITK GPTDPKAVID YTDWEDVKVY ADHLLTLVEV
TEPA
|
|---|
| |