Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0023 |
Symbol | fadA |
ID | 4479441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 28251 |
End bp | 29414 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639724539 |
Product | 3-ketoacyl-CoA thiolase |
Protein accession | YP_867674 |
Protein GI | 117918482 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0183] Acetyl-CoA acetyltransferase |
TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases [TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.188213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000293236 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACAAG CTGTTATCGT AGATTGCATT CGTACTCCTA TGGGCCGTTC TAAGGCTGGG GTGTTTCGTA ATGTACGTGC AGAAACACTC TCTGCCGAAT TAATGAAAGG TCTATTACTG CGTAACCCGC AATTAGATCC CAATACTATT GAAGATGTGA TTTGGGGCTG CGTGCAGCAA ACCCTAGAGC AAGGCTTCAA CATTGCCCGT AACGCATCAT TGCTGGCAGG TATCCCGAAG ACGGCTGGCG CTGTGACAGT CAACCGCTTA TGTGGTTCTT CGATGGAAGC CATTCATCAA GCCGCTCGTG CAATCATGAC TGGCATGGGC GACACCTTTA TCATCGGTGG TGTTGAACAC ATGGGCCACG TGCCAATGAA CCACGGTGTG GACTTCCACC CAGGTTTAGC CAATAACGTC GCTAAAGCGT CTGGCATGAT GGGTTTAACC GCTGAGATGT TGGGTAAGCT TCACGGTATT ACCCGTGAGC AGCAAGATGC CTTTGCAGTG CGTTCACACC AACGCGCTCA CGCAGCGACA GTTGAAGGCC GCTTTGCCAA GGAAATCTAT GGCATCGAAG GCCATGATGC TAACGGCGCG CTAATTAAAG TGCTGCACGA CGAAGTGATT CGTCCAGAAA CCTCAATGGA GTCATTGGCG GCGCTGCGCC CAGTATTCGA CCCAGCAAAC GGTACTGTTA CTGCCGGTAC CTCTTCAGCA TTATCTGACG GTGCTTCGGC AATGTTAGTG ATGGAAGAAT CTAAAGCGCG CGCTTTGGGT CTACCAATCC GTGCCCGTAT CCGCTCAATG GCAGTTGCAG GTTGTGACGC GGCAATCATG GGTTACGGTC CAGTACCTGC TACTCAAAAA GCACTGGCTC GCGCAGGCAT CACAGTTAAT GATTTGGATG TTATCGAGCT AAACGAAGCG TTCGCTGCTC AGTCTCTACC CTGCGTTAAA GACCTAGGTC TGCTCGATGT GGTAGAAGAC AAGATCAACC TAAATGGTGG CGCGATTGCG CTTGGCCATC CACTGGGCTG TTCTGGTGCA CGTATTTCGA CAACGCTTAT CAACCTGATG GAACACAAAG ATGCGACCTT AGGTTTAGCC ACTATGTGTA TCGGTTTAGG CCAAGGTATT GCGACCGTTT TCGAACGCGT TTAA
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Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKGLLL RNPQLDPNTI EDVIWGCVQQ TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIIGGVEH MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKLHGI TREQQDAFAV RSHQRAHAAT VEGRFAKEIY GIEGHDANGA LIKVLHDEVI RPETSMESLA ALRPVFDPAN GTVTAGTSSA LSDGASAMLV MEESKARALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALARAGITVN DLDVIELNEA FAAQSLPCVK DLGLLDVVED KINLNGGAIA LGHPLGCSGA RISTTLINLM EHKDATLGLA TMCIGLGQGI ATVFERV
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