Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3866 |
Symbol | |
ID | 4923990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4599900 |
End bp | 4601528 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640165492 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_001095988 |
Protein GI | 127514791 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000155519 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000398144 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTCATC GGTCTGCTTT TTGTCAGCTT TTTGCTGTGG CAGCAATGGC AAACAGACAA AAATCCGCAA CCGGTTGCCA CTGAATCTTC AGTTGTAGCT TCAACCGTCA CAGATGCGCA CAGTGCTGAC GTTCCCGATG CCGACGCTGC TCTTCCAGAA GCAGTAGCCG CCTCTAAAGA ACTCATTAGC GTCACGACAG ACCAACTGAC CCTGAAAATT AACCCAGTGG GTGGCGATAT CGTCTACTCT GCGCTGGTGG GTCATAAACT GGAGCAAGAC AAGGAAGAAC CTTTCGTCCT GCTGCAGCAA ACCAAAGATA TCTACTACAT CTCTCAGAGT GGTCTGATCG GCCGTAACGG CATCGACAGC AGCACTAAGG GCCGTGCCCA CTTTAGCAGC CAGTCACAGG CCTATACCCT AGCCGATGGC CAGGATACCC TGGAGATCCC ACTGACCTAT GTTGCCGACA ATGGCGTGAC CTACACTAAG GTGTTCACCC TGCACAGAGG CAAGTTCGAC GTCGGTGTTG AATATCGCAT CAACAACACC TCAGCCGAGC AGCTACAGGT GCAGATGTAT GGTCAGATCA AGCACAGCAT CAAGAAAAGC GAAAGCAGCA TGATGATGCC GACCTATCGC GGCGCCGCCT TCTCGACAGC AGATACCCGC TACGAGAAGT ACAGCTTCGA AGATATGGCC GACAAGAACC TAGACAAGAA GACCCTAGGT GGTTGGGCAG CCATGCTGCA ACACTACTTC GTATCAGCCT GGGTACCACC AGCTAACGAT CAAAACACCA TCTTCTCTAG CGTAAGCGCC GGCGGCCTGG CCAATATCGG TTTCCGTGGT GCCGTCTATG ATGTCGCACC TGGTACACAG CAGACTATCA GTGCCCAGTT CTACGTGGGT CCTAAGGATC AAGAGGCCCT ATCGGCCATC TCTGAATCGC TGAATCTGGT AGTTGATTAC GGCTTCCTAT GGTGGCTGGC AATCCCAATC CACTGGTTGT TGATGTTCTA TCAATCATTC GTGGGTAACT GGGGTGTGGC GATTATCCTA ATTACGCTGA CCGTACGTGG TATGTTGTAC CCGCTGACTA AGGCGCAATA CACCTCTATG GCCAAGATGC GTAACCTGCA ACCTAAACTG CAGGACATGA AAGAACGCTT CGGCGATGAC CGTCAGAAGA TGGGTCAGGC CATGATGGAA CTGTACAAGA AAGAGAAAGT GAACCCTATG GGTGGCTGTC TGCCTATCTT GCTACAGATG CCTATCTTCA TCGCCCTCTA CTGGGTACTG CTGGAAAGCT ACGAGCTGCG TCACGCGCCA TTCATGCTAT GGATCACCGA CCTTTCGGTA CAAGATCCAT ACTATGTACT GCCGCTGCTG ATGGGTGTAT CTATGTTCCT GATGCAGAAG ATGCAGCCGA TGGCTCCGAC CATGGATCCT ATGCAACAGA AGATGATGCA GTGGATGCCA GTTATCTTTA CCGTCTTCTT CCTCTGGTTC CCAGCGGGTC TGGTACTTTA CTGGTTGGTC GGTAACTTGG TGGCCATCAC CCAGCAGAAG ATCATCTATG CCGGTTTGGA GAAAAAAGGG TTAAAATAA
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Protein sequence | MESQRNILLI GLLFVSFLLW QQWQTDKNPQ PVATESSVVA STVTDAHSAD VPDADAALPE AVAASKELIS VTTDQLTLKI NPVGGDIVYS ALVGHKLEQD KEEPFVLLQQ TKDIYYISQS GLIGRNGIDS STKGRAHFSS QSQAYTLADG QDTLEIPLTY VADNGVTYTK VFTLHRGKFD VGVEYRINNT SAEQLQVQMY GQIKHSIKKS ESSMMMPTYR GAAFSTADTR YEKYSFEDMA DKNLDKKTLG GWAAMLQHYF VSAWVPPAND QNTIFSSVSA GGLANIGFRG AVYDVAPGTQ QTISAQFYVG PKDQEALSAI SESLNLVVDY GFLWWLAIPI HWLLMFYQSF VGNWGVAIIL ITLTVRGMLY PLTKAQYTSM AKMRNLQPKL QDMKERFGDD RQKMGQAMME LYKKEKVNPM GGCLPILLQM PIFIALYWVL LESYELRHAP FMLWITDLSV QDPYYVLPLL MGVSMFLMQK MQPMAPTMDP MQQKMMQWMP VIFTVFFLWF PAGLVLYWLV GNLVAITQQK IIYAGLEKKG LK
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