| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3855 |
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| Symbol | gidB |
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| ID | 4924019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4585058 |
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| End bp | 4585762 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640165481 |
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| Product | 16S rRNA methyltransferase GidB |
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| Protein accession | YP_001095977 |
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| Protein GI | 127514780 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
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| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.382464 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000203867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGACCGGGA TGGGAGGTCA AGCACTTCCC ATCCCTGCGA CTCGGCTTCA TAATATCCCA
TTGTTTATCG AGGATACTCC TGTGTTAGCA GCCCAATTAG ACAGCTATCT TGCCGACATG
CAGATGACGG CTACTCCGAA GCAGAAACAG CAACTGCTTG ATTTTGTTGC CATGCTTGCC
AAATGGAACA AGGCCTATAA CCTAACGTCC GTACGGGATC CCGAGCAGAT GCTGATCCGT
CATATCATGG ACAGCCTGGC GGCTAGTCCT CACCTGGTAG GTGAGCGTTT CATCGATGTG
GGCACTGGAC CTGGTCTTCC GGGGATCCCC CTGGCCATCA TGAATCCAGA TAAAGAGTTT
GTGCTGCTCG ATAGCTTGGG CAAGCGGATT CGTTTTCAAA AACAGGTTCA ATTTGAGCTG
GCGATAGGTA ATATTAGTTC GGTCGAGAGC CGGGTCGAAG CCTATCAACC CGAAGAGAAG
TTTGATGGCG TGCTCAGCCG CGCCTTCGCG TCGATCCAGG ACATGTTGCA ATGGTGCCAC
CATCTGCCAA AGCCCACTGG CTGTTTTTAT GCCTTGAAGG GACAGTTGAG CGATGAAGAG
ATGGCGAACA TGCCTGAAGG ATTTACCCTG ACCGACGTCT TCGAGCTCAA GGTGCCTCGC
CTCGACGAAC AGCGCCACCT GCTGCGGGTG GTCAAAGCGG CTTAG
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| Protein sequence | MTGMGGQALP IPATRLHNIP LFIEDTPVLA AQLDSYLADM QMTATPKQKQ QLLDFVAMLA
KWNKAYNLTS VRDPEQMLIR HIMDSLAASP HLVGERFIDV GTGPGLPGIP LAIMNPDKEF
VLLDSLGKRI RFQKQVQFEL AIGNISSVES RVEAYQPEEK FDGVLSRAFA SIQDMLQWCH
HLPKPTGCFY ALKGQLSDEE MANMPEGFTL TDVFELKVPR LDEQRHLLRV VKAA
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