Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3841 |
Symbol | |
ID | 4924245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4571807 |
End bp | 4573945 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640165467 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001095963 |
Protein GI | 127514766 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000249714 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000312087 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATTTA AGCTAGGTTC GTTTAACTAT TCTCCTGTCG GTTTTGCCGT GTTGGCCGCC CTGGCGGCAA CGCCAGCAGT GGCCGATGAT GCCGAAAACA GCCTGGTTGA GGCTAATATC GAACGTATTA CCGTGACGGG GCGAACCTTT AATGACTATA AGGTGGGCGT TGCCTCCGGC GCCATGCGTG GCGATATCGA TCTTATGGAT ACTCCGCAAT CTGTGGCTGT GATCCCCGAC TTTGTGACCG ACGAGCAGTT GGCGACCAAC CTGTCAGAGG TACTGGTGAA CGACTCGAGT GTCACCAGCG GCAGCGAGAA GTGGAATCGT CAGGTGTTTA ACATCCGCGG TTTCGAGCTG TCATCGGGTT CGGGTTATCT GATCAATGGT CAGCAGCAGT GGTCTCACTA TGTGCAGCCT ATCGAGACCC TGCAACAGGT AGAGGTGTTA AAAGGACCCT CTAGCATGCT CTATGGCCAG TCTGGCCCAG GCGGCCTGAT CAACATGGTC ACCAAGAAGC CTACCTATGA CACCCTGTTT GAGCTGGGCT TCGACACCGA CGAGCATGGA TCGACCCGTT ATCAGCTGGA TGCCGGTGGC AGCCTGAATG AAGCGCAGAC CATACGCTAC CGCACAGTGC TGGTTAAGCA AGACACTCAA TATTGGCGCG AATATCAGGA CGGCAGCAAT CAGGAGCGCG ATCGCTGGTT AGGCTATCTG AATCTGGAGT TCGATATCAC CGACGATCTT ATGCTGTCGC TCAAGTATGA CCATACTCAG GATAAGACGG GCATAGACCG TGGTGGCTGG TTAAATAGCG ATGGTGAGTT AATAGGTGGC AGAGATATCA TCTGGGATCA GCCCTGGGCC TTTACCGACA ACACCATCTC AAACCTGGGC GCCGAGCTAA CCTATCATCT CAGCGACGAT TGGCAGATCA AGGCGGGTTA TAACGACCAG CAGTTTAATC GTCAGCGTTT AGATTCTTCA CCTAGCCTAG TAAAAGGCTC GGAAGATCCT TTCACCGATG GTTACACCAT TAGCCCGTTC GACCGTTATG ACGACTGGCA ACACAAGACG GGCTTCATCG ACTTTACCGG CGACTTTAGC ACCGGTGACT TCGAGCACAA GCTGTTGATC GGCGCCAATA TGCTGGACTA CTACTATGGC CAGCTAAAGG AGGCGGGAGA TAAGAACCAG CTGGTGATGC CGGGGCAGCC TGTGCCTCGT CCGGACTTGG ATTATCATCG CGACACCACC AAGTCTGAAT CCGACTATAA GCATTATGGC TTCTATATTC AGGATCTAAT GACCATCAAC CAGCAATGGC AGTTGTTGGC TGGCGTACGT TACGATGAGC AGAAGAAGGA TGGTAAGGGC AACAACAGCT ATGCGGTATC GCCTAAGTTT GGGGTGATCT ACTCGCCGGC AGAGAATGGC AGTATCTACT TCAATTACTC TAAGAGCTTC ACGCCACAGG GGATGGTGAA TGATCCGGAT GATGTGAACG ATCAGATGAA TCTGGACCCA GAGTATGGCG AGCAGTATGA GGTCGGTACC AAGTGGGAGC TGTTCGATGG CAGTCTGCTG CTAACCGGCG CTGTCTTCGA TATTACGGTA TCCAATGTTA CCGTGACCCA AGATCTTGAG GTGATCCCGA CCAGTGGCGA TAAGACGATC ACCACTCAAT CCGGTGAACA GCGTCATAAA GGCTTCGAGA TGGGGGCACA GGGACAGCTG AGCGACAAGT GGTTCATGAC TGGATCTATG ATGTATCTCG ATGCCGAGTA TCAACGCCCG CAAGAAGACA GACTTAACGG CAAGACGCCC GTAGACGCAC CCGAGTGGTC GGCCAACATC TGGACCCGCT ACGAGATGAC AGAGGCCTTA GCACTTAACT TTGGTGCCAT CTATGTGGGC GAGCGCTTCG CCAATACGGA TAACACCATT ACCAAGGATG CCTATGTGCG CTTCGATATC GGCGCCGCCT ATACCATGGA TGTGATGGGG AGCGATGTCA GCGTACGCCT CAATGTGAAG AACCTGTTCG ATACCGATTA CCTGGCCGGT GGTACCAATA CGGATGTTAC CGTGGGTGAG GGACGTCATT TCGGCTTAGC GCTGCAAGCC AAGTTTTAA
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Protein sequence | MSFKLGSFNY SPVGFAVLAA LAATPAVADD AENSLVEANI ERITVTGRTF NDYKVGVASG AMRGDIDLMD TPQSVAVIPD FVTDEQLATN LSEVLVNDSS VTSGSEKWNR QVFNIRGFEL SSGSGYLING QQQWSHYVQP IETLQQVEVL KGPSSMLYGQ SGPGGLINMV TKKPTYDTLF ELGFDTDEHG STRYQLDAGG SLNEAQTIRY RTVLVKQDTQ YWREYQDGSN QERDRWLGYL NLEFDITDDL MLSLKYDHTQ DKTGIDRGGW LNSDGELIGG RDIIWDQPWA FTDNTISNLG AELTYHLSDD WQIKAGYNDQ QFNRQRLDSS PSLVKGSEDP FTDGYTISPF DRYDDWQHKT GFIDFTGDFS TGDFEHKLLI GANMLDYYYG QLKEAGDKNQ LVMPGQPVPR PDLDYHRDTT KSESDYKHYG FYIQDLMTIN QQWQLLAGVR YDEQKKDGKG NNSYAVSPKF GVIYSPAENG SIYFNYSKSF TPQGMVNDPD DVNDQMNLDP EYGEQYEVGT KWELFDGSLL LTGAVFDITV SNVTVTQDLE VIPTSGDKTI TTQSGEQRHK GFEMGAQGQL SDKWFMTGSM MYLDAEYQRP QEDRLNGKTP VDAPEWSANI WTRYEMTEAL ALNFGAIYVG ERFANTDNTI TKDAYVRFDI GAAYTMDVMG SDVSVRLNVK NLFDTDYLAG GTNTDVTVGE GRHFGLALQA KF
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