| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3840 |
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| Symbol | |
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| ID | 4924244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4570891 |
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| End bp | 4571661 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640165466 |
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| Product | DeoR family transcriptional regulator |
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| Protein accession | YP_001095962 |
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| Protein GI | 127514765 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.897226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000196031 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATAAAC GAAACACTCA GCAGCGCCGC CACAGCATTA TTGCCGTCTT GAATGAGACT
GGCGAGGTGA GCGTCGATGA GCTGGCTAAT CGTTTCGAGA CCTCAGAGGT CACCATACGT
AAAGACTTGG CAGTGCTGGA AAAAACCGGT CTACTGCTGC GTCGTTACGG TGGCGCCGTG
GCGATCCCCG ATGAGGTGAC TCAGCAGTTC AGCGCTAAGA TAGCCCCCAA TAAGCTATCT
ATCGCCGAGG CCGCGGCCAG GCTGATAAAA GATCATAACC GCATCATCAT AGATAGCGGC
AGCACCACCT CGGGACTGGT ACAGCAACTC AATACCAAGC GCGGCTTAGT GGTGATGACC
AACTCGTTGC AGCTAGCCAA CGCCATACAC GAGCTGGAAA ACGAGCCGAC GCTACTGATG
ACGGGCGGCA CCTGGGATCC CCATTCAGAA TCTTTCCAGG GACAGGTGGC CGAACAGGTG
CTTCGCTCCT ATAACTTCGA TCAGCTGTTT ATCGGCGCCG ATGGGATAGA TCTCGCCAGA
GGCACTACCA CCTTCAACGA GTTGACCGGC CTGAGCAAGG TGATGGCCGA GGTTTCCCGT
GAGGTGATCG TCATGGTGGA TTCAGACAAG ATAGGCAGGC GCATACCTAA CCTAGAGCTG
CCATGGCAGC AGATAAGCGT GCTCGTGACC GACGATAGAG TCGATGAGCA GACGGTAGAA
CAGATTATCG AGCAGGGTGT AGAGGTGATC CTCGCGCCCT ATTCAAAGTA A
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| Protein sequence | MNKRNTQQRR HSIIAVLNET GEVSVDELAN RFETSEVTIR KDLAVLEKTG LLLRRYGGAV
AIPDEVTQQF SAKIAPNKLS IAEAAARLIK DHNRIIIDSG STTSGLVQQL NTKRGLVVMT
NSLQLANAIH ELENEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLAR
GTTTFNELTG LSKVMAEVSR EVIVMVDSDK IGRRIPNLEL PWQQISVLVT DDRVDEQTVE
QIIEQGVEVI LAPYSK
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