| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3736 |
|---|
| Symbol | def |
|---|
| ID | 4921030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4449631 |
|---|
| End bp | 4450143 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640165362 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001095861 |
|---|
| Protein GI | 127514664 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00186056 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTAC TAAAAGTTTT ACGCTTTCCC GATGAGCGCT TACGCACGAT TGCGAAGCCC
ATTACAGAAT TTAACGCTGA GCTTCAGACA CAAATCGATA ATATGTTCGA AACCATGTAT
GAAGAGAAGG GAATTGGTCT GGCGGCGACC CAGGTAGATT ATCATCATCA GTTGATCGTT
ATGGACCTGC AAGATGACGT AGAACGCCCT AAGGTTTTCA TTAATTTAGA GATAATTGAA
AAAAGTGGCG ATTTTTGCAA CGAAGAGGGC TGCCTCTCAG TGCCCGGCAT CTACGCCAAG
GTCGATCGCG CCGAGTTTGT CACCATCAAG GCACTGGACA GAGATGGCAA CGAGTTCACT
TTAGAGGCTG ATGGCCTGTT CGCCATCTGT CTGCAACATG AGCTTGATCA CCTCAATGGC
AAACTGTTTG TCGATTACCT CTCGCCCCTC AAGCGTCAGC GTATCAAACA GAAACTCGAA
AAAGCCGCGC GCCTCGAAGC CAAACAAGGA TAA
|
|---|
| Protein sequence | MSLLKVLRFP DERLRTIAKP ITEFNAELQT QIDNMFETMY EEKGIGLAAT QVDYHHQLIV
MDLQDDVERP KVFINLEIIE KSGDFCNEEG CLSVPGIYAK VDRAEFVTIK ALDRDGNEFT
LEADGLFAIC LQHELDHLNG KLFVDYLSPL KRQRIKQKLE KAARLEAKQG
|
|---|
| |