Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3727 |
Symbol | aroE |
ID | 4921021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4441164 |
End bp | 4442078 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640165353 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001095852 |
Protein GI | 127514655 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.114545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00916884 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCTGGCAC CCTTTGCTTC ACCGAAAAAG CTCAGTAGAC TGAGCGCAAT CGAATCAAAT AGAGACCATA TCCCCATGAC GCAGCAGGTG CAAGATAGAT ACGCCGTATT TGGCCATCCC ATAGGGCATA GCAAATCCCC GGCTATTCAT CAGGCGTTCG CCAAGTCGAC GGGCGAGTCG CTGCAATATG AAGCCATCTT GGCGCCCCTC GATGGTTTCG CCGAGTCTCT GCGAGCTTTC TTCGAACATG GCGGCAAGGG GGCCAACGTG ACCCTGCCGT TCAAAGAGCA GGCCTACGCC TTGTGTGATT GCCTGGGTGA TGAGGCCAAG CTTGCCGGCG CCGTCAACAC CCTCACTCGC CTGGCCGATG GCCGCATCAA GGGCGACAAT ACCGATGGCT TAGGGCTGGT GGCGGATCTC GAGCGTCACC TTGGTAGCCT GTGCGGTAAG AGTGTCTTGC TCATCGGCGC AGGTGGTGCG GCGCGCGGCG CCATATTGCC GCTGCTGAAT GCCGGTATCG ACTCTTTGAC AATACATAAC CGTACCCATA GCAAGGCGGA GCAACTGGCC GAGGCATTTA AGGCCTATGG TCAGGTGAAG GCCAGCACCT TGGATGAACT GACCCACAGC TTCGATATTG TGATCAACTC AACCTCAGCC AGTTTGAGTG GCGAGCTGCC GAGTCTGCCC AAGGCGATTA TCGCCGCCCA TAGCGTCTGC TACGATATGA TGTATGGCCG AGAGCTCACC GCCTTTAATC ACTGGGCCTT AGACCAGGGG GCGAGTCAGA CGATCGATGG CCTGGGCATG CTGGTGGGAC AGGCTGCTAA GAGCTTCGCT ATTTGGCGCG GTGTAGAGCC CGCTGTCGAG CCAGTATTGG CAAAGCTGCG TAGTGAGCTC GCATCGCAGG CGTGA
|
Protein sequence | MLAPFASPKK LSRLSAIESN RDHIPMTQQV QDRYAVFGHP IGHSKSPAIH QAFAKSTGES LQYEAILAPL DGFAESLRAF FEHGGKGANV TLPFKEQAYA LCDCLGDEAK LAGAVNTLTR LADGRIKGDN TDGLGLVADL ERHLGSLCGK SVLLIGAGGA ARGAILPLLN AGIDSLTIHN RTHSKAEQLA EAFKAYGQVK ASTLDELTHS FDIVINSTSA SLSGELPSLP KAIIAAHSVC YDMMYGRELT AFNHWALDQG ASQTIDGLGM LVGQAAKSFA IWRGVEPAVE PVLAKLRSEL ASQA
|
| |